Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_085140 17 4312 NP_001153620 17 4312 NP_001153619 17 4312 XP_005268162 17 4312 XP_005268161 17 4312 XP_005268160 17 4312 XP_005268159 17 4312 NP_115666 16 5631 XP_006714783 16 5631 XP_005272170 16 5631 NP_004236 16 7355 NP_963925 16 7355 NP_000350 15 9605 NP_060668 15 9605 NP_001010977 15 9605 NP_872413 15 9605 XP_005262184 15 9605 NP_001164024 15 9605>NP_085140 Length = 872 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 745 ASILGAASI 753>NP_001153620 Length = 900 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 745 ASILGAASI 753>NP_001153619 Length = 879 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 752 ASILGAASI 760>XP_005268162 Length = 857 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 702 ASILGAASI 710>XP_005268161 Length = 906 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 779 ASILGAASI 787>XP_005268160 Length = 907 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 752 ASILGAASI 760>XP_005268159 Length = 934 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASILGAAIV 9 ASILGAA + Sbjct: 779 ASILGAASI 787>NP_115666 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASILGAAI 8 A ILGAAI Sbjct: 620 AGILGAAI 627>XP_006714783 Length = 599 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASILGAAI 8 A ILGAAI Sbjct: 161 AGILGAAI 168>XP_005272170 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASILGAAI 8 A ILGAAI Sbjct: 620 AGILGAAI 627>NP_004236 Length = 638 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 ++LGAA+V Sbjct: 543 NVLGAAVV 550>NP_963925 Length = 720 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 ++LGAA+V Sbjct: 625 NVLGAAVV 632>NP_000350 Length = 817 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 ++LGAA+V Sbjct: 696 TLLGAAVV 703>NP_060668 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SILGAAI 8 S+LGAA+ Sbjct: 347 SVLGAAV 353>NP_001010977 Length = 264 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ASILGAAI 8 ASILGA + Sbjct: 130 ASILGAQV 137>NP_872413 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 S++GAAI+ Sbjct: 243 SLVGAAII 250>XP_005262184 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 S++GAAI+ Sbjct: 305 SLVGAAII 312>NP_001164024 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SILGAAIV 9 S++GAAI+ Sbjct: 279 SLVGAAII 286Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.136 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 326,907 Number of extensions: 232 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |