Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1935 NP_004439 18 1935 NP_001276865 18 1935 NP_001005862 18 1935 XP_005257197 18 1935 XP_006721828 18 1935 NP_899200 17 4312 XP_005247134 17 4312 NP_000254 16 5631 NP_115613 15 9605 NP_001264900 15 9605 NP_001296 15 9605 NP_057617 15 9605 XP_006719047 15 9605 XP_005253746 15 9605 NP_001092254 15 9605 NP_001935 15 9605>NP_001276866 Length = 1055 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 657 AVVGILLVV 665>NP_004439 Length = 1255 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 657 AVVGILLVV 665>NP_001276865 Length = 1240 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 642 AVVGILLVV 650>NP_001005862 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 627 AVVGILLVV 635>XP_005257197 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 627 AVVGILLVV 635>XP_006721828 Length = 1336 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 A VGILLVV Sbjct: 738 AVVGILLVV 746>NP_899200 Length = 1261 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 AAVGILLVV 9 AAVG++L++ Sbjct: 276 AAVGVILIM 284>XP_005247134 Length = 1286 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 AAVGILLVV 9 AAVG++L++ Sbjct: 276 AAVGVILIM 284>NP_000254 Length = 743 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AAVGILLV 8 AAVG+LL+ Sbjct: 8 AAVGVLLL 15>NP_115613 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVGILLVV 9 AVG+LL++ Sbjct: 20 AVGLLLIM 27>NP_001264900 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVGILLVV 9 AVG+LL++ Sbjct: 20 AVGLLLIM 27>NP_001296 Length = 209 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 AA+G+LL V Sbjct: 91 AALGVLLSV 99>NP_057617 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGILLVV 9 +G+LLVV Sbjct: 126 IGVLLVV 132>XP_006719047 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGILLVV 9 +G+LLVV Sbjct: 44 IGVLLVV 50>XP_005253746 Length = 135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGILLVV 9 +G+LLVV Sbjct: 73 IGVLLVV 79>NP_001092254 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AAVGILLVV 9 AAVG +LVV Sbjct: 104 AAVGHVLVV 112>NP_001935 Length = 999 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AAVGILLV 8 AA+G+LL+ Sbjct: 619 AAIGLLLL 626Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.153 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,366 Number of extensions: 448 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |