Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000242 19 665 XP_005264389 19 665 NP_005931 17 4312 NP_056099 16 5631 XP_006726832 16 5631 XP_006722657 16 5631 XP_006710565 16 5631 XP_006710564 16 5631 XP_005270743 16 5631 XP_006710101 16 5631 NP_000278 15 9605 NP_619639 15 9605 NP_733842 15 9605 NP_001007526 15 9605 NP_001277284 15 9605 NP_001135758 15 9605 NP_055838 15 9605 NP_078900 15 9605 NP_001263181 15 9605 XP_005249237 15 9605 XP_006712166 15 9605 XP_005262685 15 9605>NP_000242 Length = 934 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAEVGLVRF 9 AAEVG VRF Sbjct: 14 AAEVGFVRF 22>XP_005264389 Length = 921 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAEVGLVRF 9 AAEVG VRF Sbjct: 14 AAEVGFVRF 22>NP_005931 Length = 488 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 EVGLVRF 9 E+GLVRF Sbjct: 379 ELGLVRF 385>NP_056099 Length = 3375 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAEVG+ R Sbjct: 3195 AAEVGMAR 3202>XP_006726832 Length = 223 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAEVGLVRF 9 +A+VG VRF Sbjct: 59 SAQVGSVRF 67>XP_006722657 Length = 223 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAEVGLVRF 9 +A+VG VRF Sbjct: 59 SAQVGSVRF 67>XP_006710565 Length = 3140 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAEVG+ R Sbjct: 2960 AAEVGMAR 2967>XP_006710564 Length = 3432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAEVG+ R Sbjct: 3252 AAEVGMAR 3259>XP_005270743 Length = 3453 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAEVG+ R Sbjct: 3273 AAEVGMAR 3280>XP_006710101 Length = 223 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAEVGLVRF 9 +A+VG VRF Sbjct: 59 SAQVGSVRF 67>NP_000278 Length = 980 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAE+GLV Sbjct: 31 AAELGLV 37>NP_619639 Length = 4074 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVGL+ Sbjct: 2947 AAEVGLL 2953>NP_733842 Length = 3396 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVGL+ Sbjct: 2947 AAEVGLL 2953>NP_001007526 Length = 1432 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EVGLVR 8 EVGLVR Sbjct: 783 EVGLVR 788>NP_001277284 Length = 1429 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 EVGLVR 8 EVGLVR Sbjct: 648 EVGLVR 653>NP_001135758 Length = 1091 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVG++ Sbjct: 42 AAEVGII 48>NP_055838 Length = 676 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAE GL+R Sbjct: 153 AAEDGLIR 160>NP_078900 Length = 1091 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVG++ Sbjct: 42 AAEVGII 48>NP_001263181 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 AAEVGLVR 8 AAE GL+R Sbjct: 153 AAEDGLIR 160>XP_005249237 Length = 892 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAE+GLV Sbjct: 31 AAELGLV 37>XP_006712166 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVG++ Sbjct: 64 AAEVGII 70>XP_005262685 Length = 1113 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AAEVGLV 7 AAEVG++ Sbjct: 64 AAEVGII 70Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.146 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 369,807 Number of extensions: 382 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |