Virtual Matrix for HLA-DRB1_0405

HELPHOMEMHC & Prediction Algorithms

Amino acid/Position
P1
P2
P3
P4
P5
P6
P7
P8
P9
A:
-999.00
0.00
0.00
0.00
-
0.00
0.00
-
0.00
D:
-999.00
-1.30
-1.30
-1.10
-
-1.10
-1.20
-
1.00
E:
-999.00
0.10
-1.20
-1.10
-
-2.40
-0.70
-
1.30
F:
0.00
0.80
0.80
1.00
-
-1.10
-0.05
-
-0.10
G:
-999.00
0.50
0.20
-2.40
-
-1.50
-1.20
-
0.30
H:
-999.00
0.80
0.20
-1.00
-
-1.40
-0.40
-
1.30
I:
-1.00
1.10
1.50
1.10
-
-0.10
0.08
-
-0.10
K:
-999.00
1.10
0.00
-1.50
-
-2.40
-1.30
-
-1.00
L:
-1.00
1.00
1.00
1.00
-
-1.10
0.30
-
0.00
M:
-1.00
1.10
1.40
1.80
-
-1.10
0.70
-
0.70
N:
-999.00
0.80
0.50
-0.70
-
1.30
0.70
-
0.60
P:
-999.00
-0.50
0.30
-1.30
-
0.00
-1.00
-
-0.90
Q:
-999.00
1.20
0.00
0.00
-
-1.50
-0.20
-
1.30
R:
-999.00
2.20
0.70
-2.40
-
-2.40
-0.90
-
-1.00
S:
-999.00
-0.30
0.20
-0.70
-
1.00
0.50
-
0.70
T:
-999.00
0.00
0.00
-0.90
-
1.90
0.40
-
-0.30
V:
-1.00
2.10
0.50
0.50
-
0.90
-0.10
-
-0.40
W:
0.00
-0.10
0.00
-0.05
-
-1.00
-0.70
-
-0.10
Y:
0.00
0.90
0.80
-0.40
-
-1.50
-0.20
-
0.10

Percent Threshold
1%
2%
3%
4%
5%
6%
7%
8%
9%
10%
Numerical Score
3.2
2.5
2.0
1.65
1.3
1.0
0.7
0.45
0.2
0.0

The threshold is defined as the 'percentage of best scoring natural peptides'. For example, a threshold of 1% would predict peptides in any given protein sequence which belong to the 1% best scoring natural peptides. Peptides with score greater than or equal to corresponding threshold value will be predicted as binder