The quantitative Matrix of H-2Dd
| Amino acid/positions | P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | P9 |
| A | -0.22 | -0.67 | -2.00 | 1.20 | 2.00 | 0.86 | 2.00 | 2.00 | 0.00 |
| C | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -2.00 | 0.00 | 0.00 |
| D | 0.67 | -2.00 | -2.00 | 2.00 | -2.00 | -2.00 | -2.00 | -2.00 | -2.00 |
| E | -0.67 | 0.00 | -1.00 | 1.56 | -1.43 | 2.00 | 0.00 | -1.75 | -2.00 |
| F | 1.00 | -2.00 | -2.00 | -2.00 | 0.00 | 1.00 | 2.00 | 2.00 | 5.67 |
| G | 2.00 | 6.69 | 2.00 | -2.00 | 0.00 | -0.18 | -2.00 | 0.67 | 0.00 |
| H | 0.00 | 0.00 | 2.00 | -2.00 | 0.00 | 0.00 | 2.00 | 0.00 | 0.00 |
| I | -0.86 | -2.00 | -2.00 | 0.00 | -2.00 | 2.00 | -0.50 | 2.00 | 7.00 |
| K | 2.00 | -2.00 | 0.00 | -1.33 | 0.60 | -1.43 | 0.00 | 0.67 | -2.00 |
| L | -2.00 | 0.00 | -2.00 | -1.33 | 2.00 | -0.67 | 0.67 | -2.00 | 5.91 |
| M | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 2.00 | 0.00 | 0.00 | 2.00 |
| N | 2.00 | 0.00 | -1.20 | 2.00 | 2.00 | 0.00 | 0.50 | 0.40 | 0.00 |
| P | 2.00 | 0.00 | 6.84 | 2.00 | -2.00 | -2.00 | 0.67 | 0.00 | 2.00 |
| Q | -1.33 | -2.00 | 2.00 | 0.67 | -2.00 | 2.00 | -2.00 | 0.00 | -2.00 |
| R | 2.00 | -0.67 | 2.00 | 2.00 | 2.00 | 2.00 | 0.00 | 2.00 | 0.00 |
| S | 2.00 | -1.00 | -2.00 | 2.00 | 0.00 | -2.00 | -2.00 | 2.00 | -2.00 |
| T | -2.00 | -2.00 | 0.00 | -2.00 | -1.00 | 2.00 | 0.00 | 0.67 | 2.00 |
| V | 0.67 | -2.00 | 0.00 | 2.00 | 2.00 | 0.00 | 2.00 | -1.00 | -1.00 |
| W | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| X | 0.00 | 2.00 | 0.00 | 0.00 | 0.00 | 2.00 | 0.00 | 2.00 | 0.00 |
| Y | -0.67 | -2.00 | -2.00 | -1.00 | 0.00 | 2.00 | -0.50 | 2.00 | 0.00 |
| Thresold(%) | 1% | 2% | 3% | 4% | 5% | 6% | 7% | 8% | 9% | 10% |
| Value | 15.67 | 13.80 | 12.67 | 11.80 | 11.08 | 10.53 | 10.00 | 9.55 | 9.13 | 8.70 |