The quantitative Matrix of HLA-A*3301
| Amino acid/positions | P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | P9 |
| A | 1.11 | 0.91 | -0.49 | -0.09 | -0.76 | -0.09 | 0.58 | -0.09 | -2.10 |
| C | 1.91 | -2.10 | 1.91 | -0.09 | -2.10 | -2.10 | 0.00 | -0.09 | 0.00 |
| D | 0.00 | 0.00 | -0.09 | -0.09 | -2.10 | -2.10 | -2.10 | 0.00 | -2.10 |
| E | -2.10 | -2.10 | -2.10 | 0.13 | -0.76 | -0.76 | -1.09 | -1.09 | -2.10 |
| F | 1.91 | -2.10 | 1.91 | 0.31 | 0.31 | -0.59 | 1.91 | -0.76 | -2.10 |
| G | 0.58 | -2.10 | -0.09 | -0.49 | -0.38 | -0.76 | -0.09 | -0.49 | -2.10 |
| H | 1.91 | -2.10 | 0.00 | -0.09 | -0.09 | 1.91 | -0.09 | 1.91 | 0.00 |
| I | 0.91 | 1.91 | -0.09 | 0.31 | -0.76 | 0.58 | -0.49 | -2.10 | -2.10 |
| K | -1.09 | -2.10 | 0.58 | -2.10 | -0.09 | -0.49 | -0.09 | -0.76 | 1.16 |
| L | 1.91 | 0.77 | -0.09 | -2.10 | 0.58 | 0.31 | -0.09 | 0.58 | -2.10 |
| M | 1.91 | 0.58 | 0.00 | 0.00 | 0.00 | -2.10 | 1.91 | 0.00 | -2.10 |
| N | -0.76 | 0.00 | 1.91 | 1.91 | 1.91 | 1.91 | -2.10 | 0.91 | -2.10 |
| P | -2.10 | -2.10 | -1.43 | 1.91 | 1.91 | -0.09 | 1.91 | 1.91 | -2.10 |
| Q | 0.58 | 0.00 | -0.76 | -0.09 | -2.10 | -0.09 | -0.09 | 1.91 | -2.10 |
| R | -0.09 | -2.10 | -0.76 | -0.09 | -0.09 | -0.09 | 0.58 | -0.09 | 1.56 |
| S | 0.31 | 0.58 | 0.31 | -1.30 | 1.91 | 0.77 | -0.76 | -1.43 | -2.10 |
| T | -0.49 | 0.31 | -0.76 | -0.09 | -0.09 | 1.91 | -0.76 | 0.31 | -2.10 |
| V | 0.58 | 0.99 | -2.10 | -0.09 | 0.77 | -0.09 | -0.76 | -0.76 | -2.10 |
| W | -2.10 | 0.00 | 0.00 | 0.58 | 0.00 | 1.91 | 1.91 | 1.91 | 0.00 |
| X | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Y | -0.49 | 0.00 | 1.91 | 0.00 | 0.58 | -2.10 | 1.91 | 1.91 | 0.00 |
| Thresold(%) | 1% | 2% | 3% | 4% | 5% | 6% | 7% | 8% | 9% | 10% |
| Value | 5.90 | 4.92 | 4.28 | 3.84 | 3.44 | 3.12 | 2.84 | 2.58 | 2.34 | 2.13 |