OCA Atlas for 1NGA
1NGA Hydrolase(Acting On Acid Anhydrides) date May 17, 1994
authors K.M.Flaherty, S.M.Wilbanks, C.Deluca-Flaherty, D.B.Mckay
compound source
Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment) (E.C.3.6.1.3) Mutant With Glu 175 Replaced By Ser (E175s)
 Bovine (Bos Taurus) Brain Recombinant Form Expressed In (Escherichia Coli)
symmetry Space Group: P 21 21 21
R_factor 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.300 65.000 46.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ADP, MGenzyme Adenosinetriphosphatase. Adenylpyrophosphatase. ATP monophosphatase. Triphosphatase. ATPase. Hydrolase E.C.3.6.1.3
related structures by homologous chain: 1NGE, 1NGF
similarity Belongs to the heat shock protein 70 family.[HSP70]
induction Constitutively synthesized in a wide variety of cells.
genes HSC70, HSPA8 (B. taurus); HSPA1, HSPA1A, HSPA1B (H. sapiens); HSC70, HSC73, HSPA8 (M. musculus)
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1NGA
  • CSU: Contacts of Structural Units for 1NGA
  • Likely Quarternary Molecular Structure file(s) for 1NGA
  • Retrieve 1NGA in mmCIF format [Save to disk]
    • View 1NGA in 3D
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • FirstGlance in Chemscape Chime (Install Chime freeware) This is good for easiest viewing of basic structure.
  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1NGA
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • GRASS (Graphical Representation and Analysis of Structure Server)
    • View 1NGA in 2D
  • Topology Diagram from TOPS (The Atlas of protein topology cartoons )
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Genome occurence of 1NGA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nga_2, region 189-381 [rasmolscript] [script source]
        - Domain d1nga_1, region 4-188 [rasmolscript] [script source]
  • Fold representative 1nga from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily: CATH
  • Summaries and structural analyses of PDB data files: PDBSum
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nga_]
  • SWISS-PROT database: [HS7C_BOVIN]
  • Domain organization of [HS7C_BOVIN] by SWISSPFAM
  • Conserved protein region description, domain view and alignment from family HSP70 (PF00012) of Pfam.
  • Alignments of the sequence of 1NGA with the sequences similar proteins can be viewed for classification [HS7C_BOVIN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS7C_BOVIN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1NGA
  • InterPro: IPR001023
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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