| Data retrieval |
- Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
- LPC: Ligand-Protein Contacts for 1ROG
- CSU: Contacts of Structural Units for 1ROG
- Likely Quarternary Molecular Structure file(s) for 1ROG
- Retrieve 1ROG in mmCIF format [Save to disk]
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| View 1ROG in 3D |
- Protein Explorer,
Easier to use and more powerful than RasMol. (Win and Mac only)
- FirstGlance
in Chemscape Chime
(Install Chime freeware)
This is good for easiest viewing of basic structure.
- RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 1ROG |
- STING,
shows the sequence and maps the locations of sequence residues
or residue ranges onto the 3D structure.
-
Noncovalent Bond Finder
displays the closest contacts to ligand or interface, reports
distances, walks over water bridges.
- GRASS
(Graphical Representation and Analysis of Structure Server)
|
| View 1ROG in 2D |
- Topology of domains/folds:
Chain: A from TOPS (The Atlas of protein topology cartoons )
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| Structure-derived information |
- Dipole moment, from Dipole Server at Weizmann Institute
- Fold representative 1rog from FSSP and Dali (Families of Structurally Similar Proteins)
- Domain Definition for 1rog from 3Dee ( The Database of Protein Domain Definitions )
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1rog_A] [1rog_B]
- SWISS-PROT database: [1B18_HUMAN]
- Domain organization of [1B18_HUMAN] by SWISSPFAM
- Conserved protein region
description,
domain view and
alignment
from family MHC_I (PF00129) of Pfam.
- Alignments of the sequence of 1ROG with the sequences
similar proteins can be viewed for classification [1B18_HUMAN] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [1B18_HUMAN] at ProtoMap. Click on the Cluster number.
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| Other resources with information on 1ROG |
- InterPro: IPR003006 , IPR001039 , IPR003597
- PDBREPORT (protein verification by WHAT_CHECK procedures)
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| Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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