OCA Atlas for 1JUF
1JUF Immune System date Aug 24, 2001
title Structure Of Minor Histocompatibility Antigen Peptide, H13b, Complexed To H2-Db
authors D.A.Ostrov, M.M.Roden, W.Shi, E.Palmieri, G.J.Christianson, L.Mendoza, G.Villaflor, D.Tilley, N.Shastri, H.Grey, S.C.Almo, D.C.Roopenian, S.G.Nathenson
compound source
Molecule: H2-Db Major Histocompatibility Antigen
Chain: A
Fragment: Extracellular Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Gene: H2-D
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)Plyse
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Novagen Pet-3a

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Gene: Beta-2-Microglobulin
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a

Molecule: H13b Peptide
Chain: C
Fragment: H13b Nonamer Peptide Epitope
Engineered: Yes
Synthetic: Yes
Other_details: Peptide Generated By Solid-Phase Fmoc Chemistry
symmetry Space Group: C 1 2 1
R_factor 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.997 109.707 57.654 90.00 120.52 90.00
method X-Ray Diffractionresolution 2.00 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1JUF
  • Likely Quarternary Molecular Structure file(s) for 1JUF
  • Structure Factors (r1jufsf.ent.Z) 227 Kb
  • Retrieve 1JUF in mmCIF format [Save to disk]
    • View 1JUF in 3D
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  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1JUF
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Fold representative 1juf from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1juf_A] [1juf_B] [1juf_C]
    • Other resources with information on 1JUF

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