Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 18 1135 NP_001254505 18 1482 NP_694942 18 1482 NP_776194 17 4312 NP_079335 17 4312 XP_006715631 17 4312 NP_003244 16 5631 NP_055175 16 5631 XP_005261097 16 5631 XP_005261096 16 5631 XP_005261095 16 5631 XP_005261094 16 5631 NP_006436 16 7355 NP_783165 16 7355>NP_004251 Length = 1208 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TEQIAALLR 9 TE+IAALLR Sbjct: 713 TERIAALLR 721>NP_001254505 Length = 1118 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 TEQIAALLR 9 TEQ+AAL+R Sbjct: 144 TEQLAALVR 152>NP_694942 Length = 1123 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 TEQIAALLR 9 TEQ+AAL+R Sbjct: 144 TEQLAALVR 152>NP_776194 Length = 495 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ ALLR Sbjct: 163 TEQAVALLR 171>NP_079335 Length = 715 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 EQIAALLR 9 E+IAALLR Sbjct: 328 EKIAALLR 335>XP_006715631 Length = 648 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 EQIAALLR 9 E+IAALLR Sbjct: 328 EKIAALLR 335>NP_003244 Length = 1591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ+AA R Sbjct: 999 TEQVAAFCR 1007>NP_055175 Length = 239 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 EQIAALLR 9 EQ+A+LLR Sbjct: 115 EQLASLLR 122>XP_005261097 Length = 1452 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ+AA R Sbjct: 999 TEQVAAFCR 1007>XP_005261096 Length = 1591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ+AA R Sbjct: 999 TEQVAAFCR 1007>XP_005261095 Length = 1591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ+AA R Sbjct: 999 TEQVAAFCR 1007>XP_005261094 Length = 1591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TEQIAALLR 9 TEQ+AA R Sbjct: 999 TEQVAAFCR 1007>NP_006436 Length = 2335 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EQIAALLR 9 E++AAL+R Sbjct: 1843 EEVAALIR 1850>NP_783165 Length = 576 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 EQIAALL 8 EQ+AALL Sbjct: 14 EQVAALL 20Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.131 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 316,905 Number of extensions: 564 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |