Primary information |
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CancerPDF_ID | CancerPDF_ID3715 |
PMID | 27026199 |
Peptide Sequence | NSGEKGDQGFQGQPGFPGPPGP |
Peptide Sequence in Publication | NSGEKGDQGFQGQPGFPGPPGP |
Protein Name | Collagen alpha-1(XVI) chain |
UniprotKB Entry Name | COGA1_HUMAN |
Biofluid | Urine |
M/Z | NA |
Charge | NA |
Mass/H+ | NA |
Mass (in Daltons) | 2153.96 |
Profiling Technique | "CE-MS, Micro-TOF-MS" |
Peptide Identification Technique | MS-MS |
Quantification Technique | NA |
Labeling | Label free |
FDR | NA |
p-Value | less than 0.05 |
Software | Proteome Discoverer 1.2 |
Length of Peptide | 22 |
Cancer Type | Urinary bladder Cancer (UBC) |
Database for Peptide search | Uniprot human non-redundant database |
Modification | NA |
Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
Regulation/Differential Expression | Differential expression between recurrence of UBC and recurrence control |
Validation | Independent Validation |
Sensitivity | For testing dataset 88% |
Specificity | For testing dataset 51% |
Accuracy | NA |
Secondary information |
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Peptide Atlas | NA |
IEDB | |