| Primary information |
|---|
| CancerPDF_ID | CancerPDF_ID3406 |
| PMID | 24565027 |
| Peptide Sequence | CQGEPYHDIRFNLMAVVPDR |
| Peptide Sequence in Publication | CQ(G)EPYHDIRFNLMAVVPDR |
| Protein Name | Ubiquitin carboxyl-terminal hydrolase BAP1 |
| UniprotKB Entry Name | BAP1_HUMAN |
| Biofluid | Plasma |
| M/Z | NA |
| Charge | NA |
| Mass/H+ | NA |
| Mass (in Daltons) | NA |
| Profiling Technique | Linear ion-trap mass spectrometer (LTQ) coupled with a Surveyor HPLC-MS |
| Peptide Identification Technique | MS/MS |
| Quantification Technique | NA |
| Labeling | Label Free |
| FDR | 0.05 |
| p-Value | less than 0.05 |
| Software | SEQUEST and OMSSA |
| Length of Peptide | 20 |
| Cancer Type | Breast cancer |
| Database for Peptide search | SASD (Synthetic Alternative Splicing Database) |
| Modification | NA |
| Number of Patients | 40 cancer patients for each training and testing set; 40 normal individuals for each training and testing set |
| Regulation/Differential Expression | Differentially expressed between normal and patients |
| Validation | Independent validation |
| Sensitivity | NA |
| Specificity | NA |
| Accuracy | NA |
| Secondary information |
|---|
| Peptide Atlas | NA |
| IEDB | |