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Details of CancerPDF entry with Sequence VVSLGSPSGEVSHPR
Primary information
sequence IDSeq_9461
Peptide sequenceVVSLGSPSGEVSHPR
CancerPDF_ID CancerPDF_ID1663, CancerPDF_ID8094, CancerPDF_ID8669,
PMID21136997,24982608,24618180
Protein NameAlpha-2-HS-glycoprotein,Alpha-2-HS-glycoprotein,Alpha-2-HS-glycoprotein
UniprotKB Entry NameFETUA_HUMAN,FETUA_HUMAN,FETUA_HUMAN
FluidSerum,Urine,Serum
M/Z1506.77906,NA,1505
Charge1,NA,1
Mass (in Da)NA,NA,NA
fdrNA,NA,NA
Profiling TechniqueLC-MS,Nano-LC-MS,MALDI-TOF
Peptide Identification techniqueLC-MS-MS/MS,MS/MS,MB- MALDI-TOF
Quantification TechniqueLC-ESI-MS,NA,NA
Labelled/Label FreeLabel Free,Label Free,Label Free
FDRNA,0.01,NA
CancerPDF_ID CancerPDF_ID1663, CancerPDF_ID8094, CancerPDF_ID8669,
p-ValueNA,NA,less than 0.05
SoftwareMASCOT(v. 2.2.01),"GPM search engine, MASCOT",ClinProTools
Length15,15,15
Cancer TypeColorectal cancer,Ovarian cancer,Colorectal cancer
DatabaseSwissProt Database,IPI 3.71 Human Database ,Sequest IPI Human 3.45
ModificationNA,NA,NA
Number of Patients30 patients and 30 healthy controls,6 Ovarian cancer patients and 6 normal individuals,72 colorectal cancer patient and 70 healthy. For model construction 35 healthy and 36 colorectal cancer patient were choosen and for validation 35 healthy and 36 colorectal cancer.
RegulationNA,Uniquely present in case of urine of ovarian cancer patients,Diffrentially expressed
ValidationLeave One out Cross validation,NA,Independent validation
SensitivityNA,NA,0.9444
SpecificityNA,NA,0.9429
AccuracyNA,NA,NA
Peptide AtlasPeptideAtlas
IEDB