Primary information |
---|
sequence ID | Seq_7460 |
Peptide sequence | SPGSPGPDGKTGPP |
CancerPDF_ID | CancerPDF_ID7042, |
PMID | 24982608 |
Protein Name | Collagen alpha-1(I) chain |
UniprotKB Entry Name | CO1A1_HUMAN |
Fluid | Urine |
Profiling Technique | Nano-LC-MS |
Peptide Identification technique | MS/MS |
Labelled/Label Free | Label Free |
FDR | 0.01 |
CancerPDF_ID | CancerPDF_ID7042, |
p-Value | NA |
Software | "GPM search engine, MASCOT" |
Length | 14 |
Cancer Type | Ovarian cancer |
Database | IPI 3.71 Human Database |
Modification | NA |
Number of Patients | 6 Ovarian cancer patients and 6 normal individuals |
Regulation | Uniquely present in case of urine of ovarian cancer patients |
Validation | NA |
Sensitivity | NA |
Specificity | NA |
Accuracy | NA |
Peptide Atlas | NA |
IEDB | NA |
Primary information |
---|
sequence ID | Seq_8021 |
Peptide sequence | SpGSPGPDGKTGPp |
CancerPDF_ID | CancerPDF_ID3560, |
PMID | 27026199 |
Protein Name | Collagen alpha-1(I) chain |
UniprotKB Entry Name | CO1A1_HUMAN |
Fluid | Urine |
fdr | 1281.58 |
Profiling Technique | "CE-MS, Micro-TOF-MS" |
Peptide Identification technique | MS-MS |
Labelled/Label Free | Label Free |
CancerPDF_ID | CancerPDF_ID3560, |
p-Value | less than 0.05 |
Software | Proteome Discoverer 1.2 |
Length | 14 |
Cancer Type | Bladder cancer |
Database | Uniprot Human non-redundant Database |
Modification | p:Hydroxy-Proline |
Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
Regulation | Differentially expressed between recurrence of UBC vs recurrence control |
Validation | Independent Validation |
Sensitivity | For testing dataset 88% |
Specificity | For testing dataset 51% |
Accuracy | NA |
Peptide Atlas | NA |
IEDB | NA |
Primary information |
---|
sequence ID | Seq_8022 |
Peptide sequence | SpGSpGPDGKTGPp |
CancerPDF_ID | CancerPDF_ID3561, |
PMID | 27026199 |
Protein Name | Collagen alpha1(I) chain |
UniprotKB Entry Name | CO1A1_HUMAN |
Fluid | Urine |
fdr | 1297.58 |
Profiling Technique | "CE-MS, Micro-TOF-MS" |
Peptide Identification technique | MS-MS |
Labelled/Label Free | Label Free |
CancerPDF_ID | CancerPDF_ID3561, |
p-Value | less than 0.01 |
Software | Proteome Discoverer 1.2 |
Length | 14 |
Cancer Type | Bladder cancer |
Database | Uniprot Human non-redundant Database |
Modification | p:Hydroxy-Proline |
Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
Regulation | Differentially expressed between recurrence of UBC vs recurrence control |
Validation | Independent Validation |
Sensitivity | For testing dataset 88% |
Specificity | For testing dataset 51% |
Accuracy | NA |
Peptide Atlas | NA |
IEDB | NA |