| Primary information |
|---|
| sequence ID | Seq_7713 |
| Peptide sequence | SSSYSKQFTSSTSYNRGDSTFES |
| CancerPDF_ID | CancerPDF_ID12, CancerPDF_ID1029, CancerPDF_ID1281, CancerPDF_ID2399, CancerPDF_ID8516, CancerPDF_ID12723, |
| PMID | 16896061,16395409,21136997,21136997,23667664,27058005 |
| Protein Name | Fibrinogen alpha chain,Fibrinogen alpha chain,Fibrinogen alpha,Fibrinogen alpha,Fibrinogen alpha,Fibrinogen alpha chain |
| UniprotKB Entry Name | FIBA_HUMAN,FIBA_HUMAN,FIBA_HUMAN,FIBA_HUMAN,FIBA_HUMAN,FIBA_HUMAN |
| Fluid | Serum,Serum,Serum,Plasma,Serum,Serum |
| M/Z | 2553.01,2553.01,2552.09392,2552.0939,2552.09,2553.201 |
| Charge | 1,1,1,1,1,NA |
| Mass (in Da) | 2553.09,NA,NA,NA,2554.6,NA |
| fdr | NA,NA,NA,NA,NA,NA |
| Profiling Technique | MALDI-TOF,MALDI-TOF,LC-MS,LC-MS,MALDI-TOF,MALDI-TOF |
| Peptide Identification technique | Q/TOF MS/MS,Q/TOF/TOF and LC-MS/MS,LC-MS-MS/MS,LC-MS-MS/MS,FT-ICR MS/MS + nano-HPLC,LC-MS/MS |
| Quantification Technique | NA,NA,LC-ESI-MS,LC-ESI-MS,NA,NA |
| Labelled/Label Free | Label Free,Label Free,Label Free,Label Free,Label Free,Label Free |
| FDR | NA,less than 1 “5,NA,NA,NA,NA |
| CancerPDF_ID | CancerPDF_ID12, CancerPDF_ID1029, CancerPDF_ID1281, CancerPDF_ID2399, CancerPDF_ID8516, CancerPDF_ID12723, |
| p-Value | 1.00E-05,0.128,NA,NA,NA,"less than 0.001,0.221,0.943" |
| Software | MASCOT,MASCOT (v 2.0.04 for Windows),MASCOT(v. 2.2.01),MASCOT(v. 2.2.01),MASCOT,Proteome Discoverer |
| Length | 23,23,23,23,23,23 |
| Cancer Type | Metastatic thyroid carcinomas,"Advanced Prostate, Breast and Bladder cancer",Colorectal cancer,Normal,"Breast cancer, Lung cancer, Rectal cancer",Breast cancer |
| Database | NCBI refseq Protein Database,NCBI refseq Protein Database,SwissProt Database,SwissProt Database,NA,SwissProt Database |
| Modification | NA,NA,NA,NA,NA,NA |
| Number of Patients | 40 metastatic thyroid carcinoma patients and 40 normal for training phase and 10 metastatic thyroid carcinoma and 10 normal individuals for independent validation,"Advanced prostate (n = 32), breast (n = 21), and bladder (n = 20) cancer, 33 healthy",30 patients and 30 healthy controls,27 healthy individuals,"Breast Cancer =84, lung cancer= 70, Rectal cancer = 30patients; 500 healthy"," 28 were diagnosed with Breast cancer, 27 remained cancer-free with BRCA carrier. Of the remaining patients, 39 were diagnosed with sporadic breast cancer (SBC), and 38 were healthy volunteers (WT)." |
| Regulation | NA,"Upregulated in cancer vs normal with Ratio of median intensity (patients/Controls) = 1.35, 1.31 and 1.5 in prostate, bladder and breast cancer respectively",NA,NA,NA,"Upregulated with the fold change of 0.60 in breast cancer vs Cancer free patients with brca mutation, Upregulated in breast cancer vs sporadic breast cancer with fold change of 0.85, Upregulated in BC vs healthy with 0.992 fold change" |
| Validation | Independent validation,Independent validation,Leave One out Cross validation,Leave One out Cross validation,NA,NA |
| Sensitivity | 95% on independent dataset,97.5% on independent validation dataset,NA,NA,NA,NA |
| Specificity | 95% on independent dataset,NA,NA,NA,NA,NA |
| Accuracy | NA,97.5 % on validation dataset,NA,NA,NA,NA |
| Peptide Atlas | NA |
| IEDB | |