| Primary information |
|---|
| sequence ID | Seq_6338 |
| Peptide sequence | QNGEPGGKGERGAPGEKGEGGPPG |
| CancerPDF_ID | CancerPDF_ID10904, CancerPDF_ID10908, |
| PMID | 21805675,21805675 |
| Protein Name | Collagen alpha-1(III) chain,Collagen alpha-1(III) chain |
| UniprotKB Entry Name | CO3A1_HUMAN,CO3A1_HUMAN |
| Fluid | Urine,Urine |
| M/Z | 2267.0218,2283.0055 |
| Charge | NA,NA |
| Mass (in Da) | NA,NA |
| fdr | NA,NA |
| Profiling Technique | MALDI-TOF,MALDI-TOF |
| Peptide Identification technique | MALDI-TOF-MS,MALDI-TOF-MS |
| Quantification Technique | NA,NA |
| Labelled/Label Free | Label Free,Label Free |
| FDR | 1,1 |
| CancerPDF_ID | CancerPDF_ID10904, CancerPDF_ID10908, |
| p-Value | NA,NA |
| Software | NA,NA |
| Length | 24,24 |
| Cancer Type | Muscle-invasive bladder cancer,Muscle-invasive bladder cancer |
| Database | SwissProt Database,SwissProt Database |
| Modification | "Oxidation: 5, 14, 23","Oxidation: 5, 14, 22, 23" |
| Number of Patients | 751 bladder cancer and 127 control,751 bladder cancer and 127 control |
| Regulation | Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples |
| Validation | Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic |
| Sensitivity | NA,NA |
| Specificity | NA,NA |
| Accuracy | NA,NA |
| Peptide Atlas | NA |
| IEDB | |
| Primary information |
|---|
| sequence ID | Seq_6341 |
| Peptide sequence | QNGEpGGKGERGApGEKGEGGppG |
| CancerPDF_ID | CancerPDF_ID3489, CancerPDF_ID3729, |
| PMID | 27026199,27026199 |
| Protein Name | "Collagen alpha-1(III) chain, COL3A1","Collagen alpha-1(III) chain, COL3A1" |
| UniprotKB Entry Name | COL3A1_HUMAN,CO3A1_HUMAN |
| Fluid | Urine,Urine |
| M/Z | NA,NA |
| Charge | NA,NA |
| Mass (in Da) | NA,NA |
| fdr | 2282.01,2282.01 |
| Profiling Technique | "CE-MS, Micro-TOF-MS","CE-MS, Micro-TOF-MS" |
| Peptide Identification technique | MS-MS,MS-MS |
| Quantification Technique | NA,NA |
| Labelled/Label Free | Label Free,Label Free |
| FDR | NA,NA |
| CancerPDF_ID | CancerPDF_ID3489, CancerPDF_ID3729, |
| p-Value | less than 0.05,2.00E-05 |
| Software | Proteome Discoverer 1.2,Proteome Discoverer 1.2 |
| Length | 24,24 |
| Cancer Type | Bladder cancer,Bladder cancer |
| Database | Uniprot Human non-redundant Database,Uniprot Human non-redundant Database |
| Modification | p:Hydroxy-Proline,p:Hydroxy-Proline |
| Number of Patients | 451 for training (341 patients and 110 normal) and 270 for testing(168 primary UBC patients and 102 normal controls);, 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
| Regulation | Differentially expressed between primary UBC and normal individual,Differentially expressed between recurrence of UBC vs recurrence control |
| Validation | Independent Validation,Independent Validation |
| Sensitivity | For testing dataset 91%,For testing dataset 88% |
| Specificity | For testing dataset 68%,For testing dataset 51% |
| Accuracy | For testing dataset 76%,NA |
| Peptide Atlas | NA |
| IEDB | |