| Primary information |
|---|
| sequence ID | Seq_5761 |
| Peptide sequence | NRGERGSEGSPGHPGQPGPPGPPGAPGP |
| CancerPDF_ID | CancerPDF_ID10965, CancerPDF_ID10968, CancerPDF_ID10970, CancerPDF_ID10972, |
| PMID | 21805675,21805675,21805675,21805675 |
| Protein Name | Collagen alpha-1(III) chain,Collagen alpha-1(III) chain,Collagen alpha-1(III) chain,Collagen alpha-1(III) chain |
| UniprotKB Entry Name | CO3A1_HUMAN,CO3A1_HUMAN,CO3A1_HUMAN,CO3A1_HUMAN |
| Fluid | Urine,Urine,Urine,Urine |
| M/Z | 2648.1994,2664.2119,2680.1757,2696.2304 |
| Charge | NA,NA,NA,NA |
| Mass (in Da) | NA,NA,NA,NA |
| fdr | NA,NA,NA,NA |
| Profiling Technique | MALDI-TOF,MALDI-TOF,MALDI-TOF,MALDI-TOF |
| Peptide Identification technique | MALDI-TOF-MS,MALDI-TOF-MS,MALDI-TOF-MS,MALDI-TOF-MS |
| Quantification Technique | NA,NA,NA,NA |
| Labelled/Label Free | Label Free,Label Free,Label Free,Label Free |
| FDR | 1,1,1,1 |
| CancerPDF_ID | CancerPDF_ID10965, CancerPDF_ID10968, CancerPDF_ID10970, CancerPDF_ID10972, |
| p-Value | NA,NA,NA,NA |
| Software | NA,NA,NA,NA |
| Length | 28,28,28,28 |
| Cancer Type | Muscle-invasive bladder cancer,Muscle-invasive bladder cancer,Muscle-invasive bladder cancer,Muscle-invasive bladder cancer |
| Database | SwissProt Database,SwissProt Database,SwissProt Database,SwissProt Database |
| Modification | "Oxidation: 23, 26, 28","Oxidation: 22, 23, 26, 28","Oxidation: 14, 17, 19, 20, 22","Oxidation: 11, 14, 17, 19, 20, 22" |
| Number of Patients | 751 bladder cancer and 127 control,751 bladder cancer and 127 control,751 bladder cancer and 127 control,751 bladder cancer and 127 control |
| Regulation | Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples |
| Validation | Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic |
| Sensitivity | NA,NA,NA,NA |
| Specificity | NA,NA,NA,NA |
| Accuracy | NA,NA,NA,NA |
| Peptide Atlas | NA |
| IEDB | |
| Primary information |
|---|
| sequence ID | Seq_5762 |
| Peptide sequence | NRGERGSEGSPGHpGQPGPpGPPGApGP |
| CancerPDF_ID | CancerPDF_ID3497, |
| PMID | 27026199 |
| Protein Name | Collagen alpha-1(III) chain |
| UniprotKB Entry Name | CO3A1_HUMAN |
| Fluid | Urine |
| fdr | 2647.21 |
| Profiling Technique | "CE-MS, Micro-TOF-MS" |
| Peptide Identification technique | MS-MS |
| Labelled/Label Free | Label Free |
| CancerPDF_ID | CancerPDF_ID3497, |
| p-Value | less than 0.05 |
| Software | Proteome Discoverer 1.2 |
| Length | 28 |
| Cancer Type | Bladder cancer |
| Database | Uniprot Human non-redundant Database |
| Modification | p:Hydroxy-Proline |
| Number of Patients | 451 for training (341 patients and 110 normal) and 270 for testing(168 primary UBC patients and 102 normal controls); |
| Regulation | Differentially expressed between primary UBC and normal individual |
| Validation | Independent Validation |
| Sensitivity | For testing dataset 91% |
| Specificity | For testing dataset 68% |
| Accuracy | For testing dataset 76% |
| Peptide Atlas | NA |
| IEDB | NA |