| Primary information |
|---|
| sequence ID | Seq_5673 |
| Peptide sequence | NLGHGHKHERDQGHGHQ |
| CancerPDF_ID | CancerPDF_ID95, CancerPDF_ID1092, CancerPDF_ID8584, CancerPDF_ID8641, CancerPDF_ID12747, |
| PMID | 16896061,16395409,23667664,24416269,27058005 |
| Protein Name | HMW Kininogen,HMW Kininogen,Kininogen HMW,"Kininogen L,high MW",Kininogen-1 |
| UniprotKB Entry Name | KNG1_HUMAN,KNG1_HUMAN,KNG1_HUMAN,KNG1_HUMAN,KNG1_HUMAN |
| Fluid | Serum,Serum,Serum,Plasma,Serum |
| M/Z | 1943.88,1943.88,1942.9,1943.93,1943.95 |
| Charge | 1,1,1,NA,NA |
| Mass (in Da) | 1943.9,NA,1945.03,NA,NA |
| fdr | NA,NA,NA,NA,NA |
| Profiling Technique | MALDI-TOF,MALDI-TOF,MALDI-TOF,MALDI-TOF,MALDI-TOF |
| Peptide Identification technique | Q/TOF MS/MS,Q/TOF/TOF and LC-MS/MS,FT-ICR MS/MS + nano-HPLC,MS/MS,LC-MS/MS |
| Quantification Technique | NA,NA,NA,Affinity Chromatography,NA |
| Labelled/Label Free | Label Free,Label Free,Label Free,Label Free,Label Free |
| FDR | NA,less than 1 “5,NA,NA,NA |
| CancerPDF_ID | CancerPDF_ID95, CancerPDF_ID1092, CancerPDF_ID8584, CancerPDF_ID8641, CancerPDF_ID12747, |
| p-Value | 1.00E-05,1.18E-09,NA,less than 0.05,"less than 0.05,less than 0.05,less than 0.05" |
| Software | MASCOT,MASCOT (v 2.0.04 for Windows),MASCOT,MASCOT and Markerview software version 1.2,Proteome Discoverer |
| Length | 17,17,17,17,17 |
| Cancer Type | Metastatic thyroid carcinomas,"Advanced Prostate, Breast and Bladder cancer","Breast cancer, Lung cancer, Rectal cancer",Cervical cancer,Breast cancer |
| Database | NCBI refseq Protein Database,NCBI refseq Protein Database,NA,NA,SwissProt Database |
| Modification | NA,NA,NA,NA,NA |
| Number of Patients | 40 metastatic thyroid carcinoma patients and 40 normal for training phase and 10 metastatic thyroid carcinoma and 10 normal individuals for independent validation,"Advanced prostate (n = 32), breast (n = 21), and bladder (n = 20) cancer, 33 healthy in training test set, In validation set 41 independent serum samples from patients with advanced prostate cancer (prostate 2 [PR2])","Breast Cancer =84, lung cancer= 70, Rectal cancer = 30patients; 500 healthy",67 patients and 4 healthy," 28 were diagnosed with Breast cancer, 27 remained cancer-free with BRCA carrier. Of the remaining patients, 39 were diagnosed with sporadic breast cancer (SBC), and 38 were healthy volunteers (WT)." |
| Regulation | NA,"Upregulated in cancer vs normal with Ratio of median intensity (patients/Controls) =1.58, 141 and 1 in prostate, bladder and breast cancer respectively",NA,Differential expression,"Upregulated with the fold change of 0.45 in breast cancer vs Cancer free patients with brca mutation, Upregulated in breast cancer vs sporadic breast cancer with fold change of 0.43, Upregulated in BC vs healthy with 1.386 fold change" |
| Validation | Independent validation,Independent validation,NA,NA,NA |
| Sensitivity | 95% on independent dataset,97.5% for multiclass and 100 % for binary classification system on independent validation dataset,NA,NA,NA |
| Specificity | 95% on independent dataset,NA,NA,NA,NA |
| Accuracy | NA,97.5 % on validation dataset,NA,NA,NA |
| Peptide Atlas | NA |
| IEDB | |