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Details of CancerPDF entry with Sequence DGPAGApGTPGpQG
Primary information
sequence IDSeq_1289
Peptide sequenceDGPAGAPGTPGPQG
CancerPDF_ID CancerPDF_ID4582,
PMID24982608
Protein NameCollagen alpha-1(I) chain
UniprotKB Entry NameCO1A1_HUMAN
FluidUrine
Profiling TechniqueNano-LC-MS
Peptide Identification techniqueMS/MS
Labelled/Label FreeLabel Free
FDR0.01
CancerPDF_ID CancerPDF_ID4582,
p-ValueNA
Software"GPM search engine, MASCOT"
Length14
Cancer TypeOvarian cancer
DatabaseIPI 3.71 Human Database
ModificationNA
Number of Patients6 Ovarian cancer patients and 6 normal individuals
RegulationUniquely present in case of urine of ovarian cancer patients
ValidationNA
SensitivityNA
SpecificityNA
AccuracyNA
Peptide AtlasNA
IEDBNA
Primary information
sequence IDSeq_1290
Peptide sequenceDGPAGApGTPGpQG
CancerPDF_ID CancerPDF_ID3427,
PMID27026199
Protein NameCollagen alpha-1(I) chain
UniprotKB Entry NameCOL1A1_HUMAN
FluidUrine
fdr1209.52
Profiling Technique"CE-MS, Micro-TOF-MS"
Peptide Identification techniqueMS-MS
Labelled/Label FreeLabel Free
CancerPDF_ID CancerPDF_ID3427,
p-Valueless than 0.05
SoftwareProteome Discoverer 1.2
Length14
Cancer TypeBladder cancer
DatabaseUniprot Human non-redundant Database
Modificationp:Hydroxy-Proline
Number of Patients451 for training (341 patients and 110 normal) and 270 for testing(168 primary UBC patients and 102 normal controls);
RegulationDifferentially expressed between primary UBC and normal individual
ValidationIndependent Validation
SensitivityFor testing dataset 91%
SpecificityFor testing dataset 68%
AccuracyFor testing dataset 76%
Peptide AtlasNA
IEDBNA