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Details of CancerPDF entry with Sequence APGAPGGKGDAGAPGERGPPG
Primary information
sequence IDSeq_641
Peptide sequenceAPGAPGGKGDAGAPGERGPPG
CancerPDF_ID CancerPDF_ID4308, CancerPDF_ID10833,
PMID24982608,21805675
Protein NameIsoform 1 of Collagen alpha-1(III) chain,Collagen alpha-1(III) chain
UniprotKB Entry NameCO3A1_HUMAN,CO3A1_HUMAN
FluidUrine,Urine
M/ZNA,1836.85
ChargeNA,NA
Mass (in Da)NA,NA
fdrNA,NA
Profiling TechniqueNano-LC-MS,MALDI-TOF
Peptide Identification techniqueMS/MS,MALDI-TOF-MS
Quantification TechniqueNA,NA
Labelled/Label FreeLabel Free,Label Free
FDR0.01,1
CancerPDF_ID CancerPDF_ID4308, CancerPDF_ID10833,
p-ValueNA,NA
Software"GPM search engine, MASCOT",NA
Length21,21
Cancer TypeOvarian cancer,Muscle-invasive bladder cancer
DatabaseIPI 3.71 Human Database ,SwissProt Database
ModificationNA,"Oxidation: 2, 5, 14, 20"
Number of Patients6 Ovarian cancer patients and 6 normal individuals,751 bladder cancer and 127 control
RegulationUniquely present in case of urine of ovarian cancer patients,Differentially expressed between cancer vs normal samples
ValidationNA,Mann-Whitney tests and areas under receiver-operator characteristic
SensitivityNA,NA
SpecificityNA,NA
AccuracyNA,NA
Peptide AtlasNA
IEDB