| Primary information |
|---|
| sequence ID | Seq_167 |
| Peptide sequence | ADGQPGAKGEPGDAGAKGDAGPPGP |
| CancerPDF_ID | CancerPDF_ID10887, CancerPDF_ID10891, CancerPDF_ID10894, |
| PMID | 21805675,21805675,21805675 |
| Protein Name | Collagen alpha-1(I) chain,Collagen alpha-1(I) chain,Collagen alpha-1(I) chain |
| UniprotKB Entry Name | CO1A1_HUMAN,CO1A1_HUMAN,CO1A1_HUMAN |
| Fluid | Urine,Urine,Urine |
| M/Z | 2189.9958,2206.0017,2221.9847 |
| Charge | NA,NA,NA |
| Mass (in Da) | NA,NA,NA |
| fdr | NA,NA,NA |
| Profiling Technique | MALDI-TOF,MALDI-TOF,MALDI-TOF |
| Peptide Identification technique | MALDI-TOF-MS,MALDI-TOF-MS,MALDI-TOF-MS |
| Quantification Technique | NA,NA,NA |
| Labelled/Label Free | Label Free,Label Free,Label Free |
| FDR | 1,1,1 |
| CancerPDF_ID | CancerPDF_ID10887, CancerPDF_ID10891, CancerPDF_ID10894, |
| p-Value | NA,NA,NA |
| Software | NA,NA,NA |
| Length | 25,25,25 |
| Cancer Type | Muscle-invasive bladder cancer,Muscle-invasive bladder cancer,Muscle-invasive bladder cancer |
| Database | SwissProt Database,SwissProt Database,SwissProt Database |
| Modification | Oxidation: 22,"Oxidation: 11, 23","Oxidation: 5, 11, 23" |
| Number of Patients | 751 bladder cancer and 127 control,751 bladder cancer and 127 control,751 bladder cancer and 127 control |
| Regulation | Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples,Differentially expressed between cancer vs normal samples |
| Validation | Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic,Mann-Whitney tests and areas under receiver-operator characteristic |
| Sensitivity | NA,NA,NA |
| Specificity | NA,NA,NA |
| Accuracy | NA,NA,NA |
| Peptide Atlas | NA |
| IEDB | |
| Primary information |
|---|
| sequence ID | Seq_170 |
| Peptide sequence | ADGQPGAKGEPGDAGAKGDAGPpGP |
| CancerPDF_ID | CancerPDF_ID3717, |
| PMID | 27026199 |
| Protein Name | Collagen alpha-1(I) chain |
| UniprotKB Entry Name | CO1A1_HUMAN |
| Fluid | Urine |
| fdr | 2188.99 |
| Profiling Technique | "CE-MS, Micro-TOF-MS" |
| Peptide Identification technique | MS-MS |
| Labelled/Label Free | Label Free |
| CancerPDF_ID | CancerPDF_ID3717, |
| p-Value | less than 0.05 |
| Software | Proteome Discoverer 1.2 |
| Length | 25 |
| Cancer Type | Bladder cancer |
| Database | Uniprot Human non-redundant Database |
| Modification | p:Hydroxy-Proline |
| Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
| Regulation | Differentially expressed between recurrence of UBC vs recurrence control |
| Validation | Independent Validation |
| Sensitivity | For testing dataset 88% |
| Specificity | For testing dataset 51% |
| Accuracy | NA |
| Peptide Atlas | NA |
| IEDB | NA |
| Primary information |
|---|
| sequence ID | Seq_171 |
| Peptide sequence | ADGQpGAKGEpGDAGAKGDAGPPGp |
| CancerPDF_ID | CancerPDF_ID3721, |
| PMID | 27026199 |
| Protein Name | Collagen alpha-1(I) chain |
| UniprotKB Entry Name | CO1A1_HUMAN |
| Fluid | Urine |
| fdr | 2220.99 |
| Profiling Technique | "CE-MS, Micro-TOF-MS" |
| Peptide Identification technique | MS-MS |
| Labelled/Label Free | Label Free |
| CancerPDF_ID | CancerPDF_ID3721, |
| p-Value | less than 0.05 |
| Software | Proteome Discoverer 1.2 |
| Length | 25 |
| Cancer Type | Bladder cancer |
| Database | Uniprot Human non-redundant Database |
| Modification | p:Hydroxy-Proline |
| Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
| Regulation | Differentially expressed between recurrence of UBC vs recurrence control |
| Validation | Independent Validation |
| Sensitivity | For testing dataset 88% |
| Specificity | For testing dataset 51% |
| Accuracy | NA |
| Peptide Atlas | NA |
| IEDB | NA |
| Primary information |
|---|
| sequence ID | Seq_173 |
| Peptide sequence | ADGQpGAKGEpGDAGAKGDAGppGP |
| CancerPDF_ID | CancerPDF_ID3723, |
| PMID | 27026199 |
| Protein Name | Collagen alpha-1(I) chain |
| UniprotKB Entry Name | CO1A1_HUMAN |
| Fluid | Urine |
| fdr | 2236.98 |
| Profiling Technique | "CE-MS, Micro-TOF-MS" |
| Peptide Identification technique | MS-MS |
| Labelled/Label Free | Label Free |
| CancerPDF_ID | CancerPDF_ID3723, |
| p-Value | less than 0.05 |
| Software | Proteome Discoverer 1.2 |
| Length | 25 |
| Cancer Type | Bladder cancer |
| Database | Uniprot Human non-redundant Database |
| Modification | p:Hydroxy-Proline |
| Number of Patients | 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls) |
| Regulation | Differentially expressed between recurrence of UBC vs recurrence control |
| Validation | Independent Validation |
| Sensitivity | For testing dataset 88% |
| Specificity | For testing dataset 51% |
| Accuracy | NA |
| Peptide Atlas | NA |
| IEDB | NA |