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Details of CancerPDF entry with Sequence AALLSPYSYSTTAVVTNPKE
Primary information
sequence IDSeq_68
Peptide sequenceAALLSPYSYSTTAVVTNPKE
CancerPDF_ID CancerPDF_ID2111, CancerPDF_ID4061,
PMID21136997,24982608
Protein NameTransthyretin,Transthyretin
UniprotKB Entry NameTTHY_HUMAN,TTHY_HUMAN
FluidSerum,Urine
M/Z2111.07865,NA
Charge1,NA
Mass (in Da)NA,NA
fdrNA,NA
Profiling TechniqueLC-MS,Nano-LC-MS
Peptide Identification techniqueLC-MS-MS/MS,MS/MS
Quantification TechniqueLC-ESI-MS,NA
Labelled/Label FreeLabel Free,Label Free
FDRNA,0.01
CancerPDF_ID CancerPDF_ID2111, CancerPDF_ID4061,
p-ValueNA,NA
SoftwareMASCOT(v. 2.2.01),"GPM search engine, MASCOT"
Length20,20
Cancer TypeColorectal cancer,Ovarian cancer
DatabaseSwissProt Database,IPI 3.71 Human Database
ModificationNA,NA
Number of Patients30 patients and 30 healthy controls,6 Ovarian cancer patients and 6 normal individuals
RegulationNA,Uniquely present in case of urine of ovarian cancer patients
ValidationLeave One out Cross validation,NA
SensitivityNA,NA
SpecificityNA,NA
AccuracyNA,NA
Peptide AtlasPeptideAtlas
IEDB