2FKG De Novo Protein date Jan 04, 2006
title The Crystal Structure Of Engineered Ospa
authors K.Makabe, V.Terechko, G.Gawlak, S.Yan, S.Koide
compound source
Molecule: Outer Surface Protein A
Chain: A
Engineered: Yes
 Organism_scientific: Borrelia Burgdorferi
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
symmetry Space Group: C 1 2 1
R_factor 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.447 76.894 51.941 90.00 120.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A

  • cell outer membrane
    • Primary referenceAtomic structures of peptide self-assembly mimics., Makabe K, McElheny D, Tereshko V, Hilyard A, Gawlak G, Yan S, Koide A, Koide S, Proc Natl Acad Sci U S A. 2006 Nov 8;. PMID:17093048
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2fkg.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 2FKG
  • Likely Quarternary Molecular Structure file(s) for 2FKG
  • Structure Factors (98 Kb)
  • Retrieve 2FKG in mmCIF format [Save to disk]
    • View 2FKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2FKG
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FKG, from MSDmotif at EBI
  • Fold representative 2fkg from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fkg_A]
    • Other resources with information on 2FKG
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2007
    Bioinformatics and Biological Computing
    Weizmann Institute of Science