2F6A Cell Adhesion Structural Protein date Nov 28, 2005
title Collagen Adhesin And Collagen Complex Structure
authors Y.Zong, S.L.V.Narayana
compound source
Molecule: Collagen Adhesin
Chain: A, B, C, D
Fragment: Extracellular Domain
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_common: Bacteria
Gene: Cna
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet

Molecule: Collagen
Chain: E, F, G, H, I, J
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized Collagen Like Peptide
symmetry Space Group: C 2 2 21
R_factor 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.547 193.820 205.189 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.29 Å
ligand HYP enzyme
Gene CNA (S. aureus)
Gene
Ontology
ChainFunctionProcessComponent
F
  • phosphate transport
  • cytoplasm
  • Primary referenceA 'Collagen Hug' model for Staphylococcus aureus CNA binding to collagen., Zong Y, Xu Y, Liang X, Keene DR, Hook A, Gurusiddappa S, Hook M, Narayana SV, EMBO J. 2005 Dec 21;24(24):4224-36. Epub 2005 Dec 15. PMID:16362049
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (2f6a.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (2f6a.pdb2.gz) 109 Kb
  • CSU: Contacts of Structural Units for 2F6A
  • Likely Quarternary Molecular Structure file(s) for 2F6A
  • Structure Factors (231 Kb)
  • Retrieve 2F6A in mmCIF format [Save to disk]
  • View 2F6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 2F6A
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F6A, from MSDmotif at EBI
  • Fold representative 2f6a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f6a_I] [2f6a_J] [2f6a_E] [2f6a_C] [2f6a_H] [2f6a_D] [2f6a_A] [2f6a_B] [2f6a_G] [2f6a_F]
  • Other resources with information on 2F6A
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2007
    Bioinformatics and Biological Computing
    Weizmann Institute of Science