2BVC Ligase date Jun 22, 2005
title Crystal Structure Of Mycobacterium Tuberculosis Glutamine Synthetase In Complex With A Transition State Mimic
authors W.W.Krajewski, T.A.Jones, S.L.Mowbray
compound source
Molecule: Glutamine Synthetase 1
Synonym: Glutamate Ammonia Ligase 1
Chain: A, B, C, D, E, F
Ec: 6.3.1.2
Engineered: Yes
Expression_system: Escherichia Coli
Expression_system_strain: Bl21-Ai
Expression_system_plasmid: Pcr T7ct-Topo
Organism_scientific: Mycobacterium Tuberculosis
Strain: H37rv
symmetry Space Group: C 2 2 21
R_factor 0.19140
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.261 229.457 203.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.1 Å
ligand ADP, CL, MG, P3S enzyme Ligase E.C.6.3.1.2 BRENDA
note 2BVC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • nucleotide binding
  • glutamate-ammonia ligase act...
  • ligase activity
  • glutamine biosynthetic proce...
  • nitrogen compound metabolic ...
  • nitrogen fixation
  • cytoplasm
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (518 Kb) [Save to disk]
  • Biological Unit Coordinates (2bvc.pdb1.gz) 911 Kb
  • CSU: Contacts of Structural Units for 2BVC
  • Likely Quarternary Molecular Structure file(s) for 2BVC
  • Structure Factors (1348 Kb)
  • Retrieve 2BVC in mmCIF format [Save to disk]
  • View 2BVC in 3D
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 2BVC
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BVC, from MSDmotif at EBI
  • Fold representative 2bvc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bvc_A] [2bvc_B] [2bvc_D] [2bvc_C] [2bvc_F] [2bvc_E]
  • Other resources with information on 2BVC
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2006
    Bioinformatics and Biological Computing
    Weizmann Institute of Science