2BGC Transcription date Dec 16, 2004
title Prfa-G145s, A Constitutive Active Mutant Of The Transcriptional Regulator In L.Monocytogenes
authors M.Eiting, G.Hagelueken, W.D.Schubert, D.W.Heinz
compound source
Molecule: Prfa
Chain: A, B, D, E, F, G, H, I
Engineered: Yes
Organism_scientific: Listeria Monocytogenes
Strain: Egd-E
Expression_system: Escherichia Coli
Expression_system_strain: M15
Expression_system_plasmid: Pqe-30
symmetry Space Group: C 1 2 1
R_factor 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.247 100.243 189.563 90.00 90.33 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand DTT, DTU, PR3 enzyme
note 2BGC is a representative structure
related structures by homologous chain: 2BEO
similarity Contains1 hth crp-type dna-binding domain.
Genes LMO0200, PRFA (L. monocytogenes)
function Positively regulates expression of listeriolysin, of 1- phosphadidylinositol phosphodiesterase (pi-plc) and other virulence factors.
Gene
Ontology
ChainFunctionProcessComponent
H, F, A, D, I, G, E, B
  • DNA binding
  • transcription
  • regulation of transcription,...
  • pathogenesis
  • regulation of transcription

  • Primary referenceThe mutation G145S in PrfA, a key virulence regulator of Listeria monocytogenes, increases DNA-binding affinity by stabilizing the HTH motif., Eiting M, Hageluken G, Schubert WD, Heinz DW, Mol Microbiol. 2005 Apr;56(2):433-46. PMID:15813735
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (2bgc.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (2bgc.pdb2.gz) 80 Kb
  • Biological Unit Coordinates (2bgc.pdb3.gz) 80 Kb
  • Biological Unit Coordinates (2bgc.pdb4.gz) 79 Kb
  • CSU: Contacts of Structural Units for 2BGC
  • Likely Quarternary Molecular Structure file(s) for 2BGC
  • Structure Factors (735 Kb)
  • Retrieve 2BGC in mmCIF format [Save to disk]
  • View 2BGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
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  • Visual 3D analysis of 2BGC
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  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BGC, from MSDmotif at EBI
  • Fold representative 2bgc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bgc_H] [2bgc_G] [2bgc_D] [2bgc_A] [2bgc_F] [2bgc_E] [2bgc_B] [2bgc_I]
  • Other resources with information on 2BGC
  • InterPro: IPR012318 , IPR000595 , IPR011991 , IPR001808
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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