2AQM Oxidoreductase date Aug 18, 2005
title Cuzn Superoxide Dismutase From Brucella Abortus
authors M.Didonato, C.J.Kassmann, C.K.Bruns, D.E.Cabelli, Z.Cao, L.B.Tabatabai, J.S.Kroll, E.D.Getzoff
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Brucella Abortus
Organism_common: Bacteria
Gene: Sodc
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
symmetry Space Group: I 2 2 2
R_factor
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.910 70.528 80.359 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand CU1, GOL, SO4, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene BRUAB2 ; SODC (B. abortus)
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...
  • copper, zinc superoxide dism...
  • copper ion binding
  • zinc ion binding
  • antioxidant activity
  • oxidoreductase activity
  • metal ion binding
  • superoxide metabolic process...
  • periplasmic space
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2aqm.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 2AQM
  • Likely Quarternary Molecular Structure file(s) for 2AQM
  • Structure Factors (504 Kb)
  • Retrieve 2AQM in mmCIF format [Save to disk]
  • View 2AQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 2AQM
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AQM, from MSDmotif at EBI
  • Fold representative 2aqm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aqm_A]
  • Other resources with information on 2AQM
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2007
    Bioinformatics and Biological Computing
    Weizmann Institute of Science