2AIZ Membrane Protein date Aug 01, 2005
title Solution Structure Of Peptidoglycan Associated Lipoprotein From Haemophilus Influenza Bound To Udp-N-Acetylmuramoyl-L- Alanyl-D-Glutamyl-Meso-2,6-Diaminopimeloyl-D-Alanyl-D- Alanine
authors L.M.Parsons, F.Lin, J.Orban, Structure 2 Function Project (S2f)
compound source
Molecule: Outer Membrane Protein P6
Chain: P
Synonym: Omp P6, 15 Kda Peptidoglycan- Associated Lipoprotein, Pc Protein, Peptidoglycan Associated Lipoprotein, Pal;
Engineered: Yes
Organism_scientific: Haemophilus Influenzae
Organism_common: Bacteria
Gene: Pal, Ompp6
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamyl-Meso-2, 6-Diaminopimeloyl-D-Alanyl-D-Alanine;
Chain: U
Engineered: Yes

Synthetic: Yes
methodNMR, 20 Structures
ligand 6CL, AMU, DAL, DGL, UDP enzyme
Genes HI0381, OMPP6, PAL (H. influenzae)
Gene
Ontology
ChainFunctionProcessComponent
P

  • cell outer membrane
  • membrane
  • integral to membrane
  • outer membrane
  • Primary referencePeptidoglycan recognition by pal, an outer membrane lipoprotein(,)., Parsons LM, Lin F, Orban J, Biochemistry. 2006 Feb 21;45(7):2122-8. PMID:16475801
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (714 Kb) [Save to disk]
  • Biological Unit Coordinates (2aiz.pdb1.gz) 710 Kb
  • CSU: Contacts of Structural Units for 2AIZ
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2AIZ in mmCIF format [Save to disk]
  • View 2AIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • On AstexViewer, from MSD-EBI (viewer documentation).
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  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AIZ, from MSDmotif at EBI
  • Fold representative 2aiz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aiz_P] [2aiz_U]
  • Other resources with information on 2AIZ
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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