1XN1 Transferase date Oct 04, 2004
title Crystal Structure Of Lumazine Synthase From Brucella Abortus (Orthorhombic Form At 3.05 Angstroms)
authors S.Klinke, V.Zylberman, D.R.Vega, B.G.Guimaraes, B.C.Braden, F.A.Goldbaum
compound source
Molecule: 6,7-Dimethyl-8-Ribityllumazine Synthase
Chain: A, B, C, D, E, F, G, H, I, J
Synonym: Dmrl Synthase, Lumazine Synthase, Riboflavin Synthase Beta Chain;
Ec: 2.5.1.9
Engineered: Yes
Organism_scientific: Brucella Abortus
Organism_common: Bacteria
Gene: Ribh
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 21 21 21
R_factor 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.554 120.238 159.372 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand NA, PO4, SO4 enzyme Transferase E.C.2.5.1.9 BRENDA
Genes BRUAB2 ; RIBH-2, RIBH2, RIBH (B. abortus)
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G
  • riboflavin synthase activity...
  • transferase activity
  • riboflavin biosynthetic proc...
  • riboflavin synthase complex
  • Primary referenceCrystallographic Studies on Decameric Brucella spp. Lumazine Synthase: A Novel Quaternary Arrangement Evolved for a New Function?, Klinke S, Zylberman V, Vega DR, Guimaraes BG, Braden BC, Goldbaum FA, J Mol Biol 2005 Oct 14;353(1):124-37. PMID:16165152
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (1xn1.pdb1.gz) 231 Kb
  • CSU: Contacts of Structural Units for 1XN1
  • Likely Quarternary Molecular Structure file(s) for 1XN1
  • Structure Factors (353 Kb)
  • Retrieve 1XN1 in mmCIF format [Save to disk]
  • View 1XN1 in 3D
  • Proteopedia, because life has more than 2D.
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XN1, from MSDmotif at EBI
  • Fold representative 1xn1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xn1_E] [1xn1_J] [1xn1_G] [1xn1_H] [1xn1_B] [1xn1_F] [1xn1_C] [1xn1_A] [1xn1_D] [1xn1_I]
  • Other resources with information on 1XN1
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