Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (69 Kb) [Save to disk]
- Biological Unit Coordinates (1pqw.pdb1.gz) 56 Kb
- CSU: Contacts of Structural Units for 1PQW
- Likely Quarternary Molecular Structure file(s) for 1PQW
- Structure Factors (191 Kb)
- Retrieve 1PQW in mmCIF format [Save to disk]
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View 1PQW in 3D |
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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Visual 3D analysis of 1PQW |
- Protein Explorer,
Easier to use and more powerful than RasMol. (Win and Mac only)
-
Noncovalent Bond Finder
displays the closest contacts to ligand or interface, reports
distances, walks over water bridges.
- STING,
shows the sequence and maps the locations of sequence residues
or residue ranges onto the 3D structure.
- GRASS
(Graphical Representation and Analysis of Structure Server)
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
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Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 1PQW,
from MSDmotif at EBI
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1pqwa_, region A
[Jmol]
[rasmolscript]
[script source] - Domain d1pqwb_, region B
[Jmol]
[rasmolscript]
[script source]
- Fold representative 1pqw from FSSP and Dali (Families of Structurally Similar Proteins)
- Class (fold), Architecture (subfold), Topology, Homologous superfamily from
CATH
- Summaries and structural analyses of PDB data files from
PDBSum
- Identification of Protein Pockets & Cavities at
CASTp
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Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1pqw_A] [1pqw_B]
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Other resources with information on 1PQW |
- MMDB (Entrez's Structure Database)
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Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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