1P83 Chaperone date May 06, 2003
title Nmr Structure Of 1-25 Fragment Of Mycobacterium Tuberculosis Cpn10
authors A.Ciutti, O.Spiga, E.Giannozzi, M.Scarselli, D.Di Maro, D.Calamandrei, N.Niccolai, A.Bernini
compound source
Molecule: 10 Kda Chaperonin
Chain: A
Fragment: N-Terminal Domain, Residue 1-25
Synonym: Protein Cpn10, Groes Protein, Bcg-A Heat Shock Protein, 10 Kda Antigen;
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis
methodNMR, 20 Structures
similarity Belongs to the groes chaperonin family.[Cpn10]
subunit Heptamer of 7 subunits arranged in a ring (by similarity).
subcellular loc. Cytoplasm (by similarity).
gene MT3527 (M. tuberculosis)
function Binds to cpn60 in the presence of mg-atp and suppresses the atpase activity of the latter.
Gene
Ontology
ChainFunctionProcessComponent
A
  • ATP binding
  • unfolded protein binding
  • protein folding
  • response to unfolded protein...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1p83.pdb1.gz) 104 Kb
  • CSU: Contacts of Structural Units for 1P83
  • Retrieve 1P83 in mmCIF format [Save to disk]
  • View 1P83 in 3D
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1P83
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P83, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p83a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p83_A]
  • Other resources with information on 1P83
  • InterPro: IPR001476
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2006
    Bioinformatics and Biological Computing
    Weizmann Institute of Science