1P4T Membrane Protein date Apr 24, 2003
title Crystal Structure Of Neisserial Surface Protein A (Nspa)
authors L.Vandeputte-Rutten, M.P.Bos, J.Tommassen, P.Gros
compound source
Molecule: Outer Membrane Protein Nspa
Chain: A
Synonym: Neisserial Surface Protein A, Nspa
Engineered: Yes
Organism_scientific: Neisseria Meningitidis
Gene: Nspa
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: H 3 2
R_factor 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.372 97.372 171.939 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand CXE, ETA, SO4 enzyme
note 1P4T is a representative structure
subcellular loc. Membrane localization by OPM: Bacterial gram-negative outer membrane
extracellular side
periplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A
  • porin activity

  • membrane
  • Primary referenceCrystal structure of Neisserial surface protein A (NspA), a conserved outer membrane protein with vaccine potential., Vandeputte-Rutten L, Bos MP, Tommassen J, Gros P, J Biol Chem 2003 Jul 4;278(27):24825-30. PMID:12716881
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1p4t.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1P4T
  • Likely Quarternary Molecular Structure file(s) for 1P4T
  • Structure Factors (88 Kb)
  • Retrieve 1P4T in mmCIF format [Save to disk]
  • View 1P4T in 3D
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1P4T
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P4T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p4ta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p4t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p4t_A]
  • Other resources with information on 1P4T
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2006
    Bioinformatics and Biological Computing
    Weizmann Institute of Science