1G9U	Toxin	date	Nov 28, 2000
title	Crystal Structure Of Yopm-Leucine Rich Effector Protein From Yersinia Pestis
authors	A.G.Evdokimov, D.E.Anderson, K.M.Routzahn, D.S.Waugh
compound		source
Molecule: Outer Protein Yopm Chain: A Engineered: Yes		Organism_scientific: Yersinia Pestis Organism_common: Bacteria Gene: Yopm Expression_system: Escherichia Coli Expression_system_common: Bacteria Expression_system_strain: Bl21de3 Expression_system_vector_type: Modified Pmal
symmetry	Space Group: P 42 2 2	R_factor
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.359 109.359 101.499 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	ACT, CA, HG	enzyme
related structures	by homologous chain: 1JL5
similarity	Contains 15 lrr (leucine-rich) repeats.[LRR_1]
subunit	Homotetramer forming a hollow cylinder with an inner diameter of approximately 35 angstroms.
subcellular loc.	Outer membrane and secreted.
Genes	Y0059, Y5054, YOP48, YOPM, YPCD1.26C (Y. pestis); YP (Y. pestis)
Gene Ontology	Chain Function Process Component A calcium ion binding protein binding metal ion binding membrane outer membrane
Primary reference	Unusual molecular architecture of the Yersinia pestis cytotoxin YopM: a leucine-rich repeat protein with the shortest repeating unit., Evdokimov AG, Anderson DE, Routzahn KM, Waugh DS, J Mol Biol 2001 Sep 28;312(4):807-21. PMID:11575934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1g9u.pdb1.gz) 247 Kb CSU: Contacts of Structural Units for 1G9U Likely Quarternary Molecular Structure file(s) for 1G9U Structure Factors (303 Kb) Retrieve 1G9U in mmCIF format [Save to disk]

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1G9U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g9ua_, region A [Jmol] [rasmolscript] [script source] Fold representative 1g9u from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g9u_A]

Other resources with information on 1G9U

InterPro: IPR001611 , IPR007088 PDBREPORT (protein verification by WHAT_CHECK procedures) MMDB (Entrez's Structure Database)

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