EbolaVCR: Computational resources for designing drugs and vaccines against EBOLA virus

Welcome to Home page of EbolaVCR

Ebola Virus Computational Resources (EbolaVCR) is the in silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. This server enlists possible vaccine candidates, therapeutic siRNAs and other related resources.

Reference: Dhanda et. al. (2016) A web-based resource for designing therapeutics against Ebola Virus. Sci Rep. 6:24782.

Strain	Gene	mRNA	siRNA	Position	Efficacy
Result
NC_004161.1	VP40	GAAGCUACAGUGAAUGUAA	UUACAUUCACUGUAGCUUC	226	1.133364
NC_004161.1	VP40	GGACAUGCUUCAGACUUAA	UUAAGUCUGAAGCAUGUCC	676	1.131273
NC_004161.1	VP40	GACCAAGUGUCAUAGUCAA	UUGACUAUGACACUUGGUC	77	1.125936
NC_004161.1	VP40	AGACAGGAAAGAAAGGACA	UGUCCUUUCUUUCCUGUCU	662	1.081234
NC_004161.1	VP40	AGGACAUGCUUCAGACUUA	UAAGUCUGAAGCAUGUCCU	675	1.061668
NC_004161.1	VP40	CAAUUAUGUUGGCUUCCUA	UAGGAAGCCAACAUAAUUG	341	1.057767
NC_004161.1	VP40	CUGACAAGAUUCAAACAAU	AUUGUUUGAAUCUUGUCAG	701	1.057548
NC_004161.1	VP40	CGACCAAGUGUCAUAGUCA	UGACUAUGACACUUGGUCG	76	1.038244
NC_004161.1	VP40	CAAGUGUCAUAGUCAAUGA	UCAUUGACUAUGACACUUG	80	1.022016
NC_004161.1	VP40	GGGGAAGACAGGAAAGAAA	UUUCUUUCCUGUCUUCCCC	657	1.019970
NC_004161.1	VP40	GACAAGAUUCAAACAAUCA	UGAUUGUUUGAAUCUUGUC	703	1.013401
NC_004161.1	VP40	GGAAAGAAAGGACAUGCUU	AAGCAUGUCCUUUCUUUCC	667	1.011727
NC_004161.1	VP40	CAGACUUAACAUCACCUGA	UCAGGUGAUGUUAAGUCUG	686	1.010391
NC_004161.1	VP40	CGAAAUAUGUUGGACUUGA	UCAAGUCCAACAUAUUUCG	869	1.009429
NC_004161.1	VP40	GUAGCUGAUCAGAAGAUAU	AUAUCUUCUGAUCAGCUAC	298	1.008396
NC_004161.1	VP40	GCCUUUAUAUUGGAAGCUA	UAGCUUCCAAUAUAAAGGC	214	1.006945
NC_004161.1	VP40	GGAAGCUACAGUGAAUGUA	UACAUUCACUGUAGCUUCC	225	1.004506
NC_004161.1	VP40	CCAGAAUUACUAGUUCAAA	UUUGAACUAGUAAUUCUGG	790	1.004372
NC_004161.1	VP40	GGUGUAGCUGAUCAGAAGA	UCUUCUGAUCAGCUACACC	295	0.999779
NC_004161.1	VP40	CCUCCAGCAUAUAAUGAUA	UAUCAUUAUAUGCUGGAGG	28	0.994574
NC_004161.1	VP40	GCAUAUAAUGAUAUUGCAU	AUGCAAUAUCAUUAUAUGC	34	0.994071
NC_004161.1	VP40	CCUGACAAGAUUCAAACAA	UUGUUUGAAUCUUGUCAGG	700	0.992122
NC_004161.1	VP40	CGGCUCCUCCAGCAUAUAA	UUAUAUGCUGGAGGAGCCG	23	0.979259
NC_004161.1	VP40	CCUCAAAAUUGUCCCGAUU	AAUCGGGACAAUUUUGAGG	738	0.977023
NC_004161.1	VP40	AUGCAAUACCGGACCUCAA	UUGAGGUCCGGUAUUGCAU	725	0.970604
NC_004161.1	VP40	CCCAGUAUUUCACAUUUGA	UCAAAUGUGAAAUACUGGG	506	0.969779
NC_004161.1	VP40	CGGAGUAGCUUCUGCCUUU	AAAGGCAGAAGCUACUCCG	201	0.969128
NC_004161.1	VP40	CACCCAGGAUUGUGAUUCA	UGAAUCACAAUCCUGGGUG	921	0.968997
NC_004161.1	VP40	GAUAACAUUGAUCACUCAA	UUGAGUGAUCAAUGUUAUC	169	0.968460
NC_004161.1	VP40	GGCAUUCCUUCAAGAGUUU	AAACUCUUGAAGGAAUGCC	465	0.967867
NC_004161.1	VP40	GACUCCUAAGGUUGGGCAA	UUGCCCAACCUUAGGAGUC	443	0.965005
NC_004161.1	VP40	CUUUAUAUUGGAAGCUACA	UGUAGCUUCCAAUAUAAAG	216	0.964685
NC_004161.1	VP40	CAAACAAUCAUGAAUGCAA	UUGCAUUCAUGAUUGUUUG	712	0.964167
NC_004161.1	VP40	GACUUAACAUCACCUGACA	UGUCAGGUGAUGUUAAGUC	688	0.964129
NC_004161.1	VP40	UCACCUGACAAGAUUCAAA	UUUGAAUCUUGUCAGGUGA	697	0.963376
NC_004161.1	VP40	UCCAGAAUUACUAGUUCAA	UUGAACUAGUAAUUCUGGA	789	0.962471
NC_004161.1	VP40	GGGCAGAUGUUCCAUCAAA	UUUGAUGGAACAUCUGCCC	128	0.962015
NC_004161.1	VP40	CUCUAAAGCUCAUCACUCA	UGAGUGAUGAGCUUUAGAG	533	0.961604
NC_004161.1	VP40	ACCAAGUGUCAUAGUCAAU	AUUGACUAUGACACUUGGU	78	0.957853
NC_004161.1	VP40	GACCAGUGGCUGAUGAUAA	UUAUCAUCAGCCACUGGUC	155	0.954297
NC_004161.1	VP40	CUAACAGCUCUAAAGCUCA	UGAGCUUUAGAGCUGUUAG	526	0.954233
NC_004161.1	VP40	CCUUCAAGAGUUUGUUCUU	AAGAACAAACUCUUGAAGG	471	0.953512
NC_004161.1	VP40	GGAGUAGCUUCUGCCUUUA	UAAAGGCAGAAGCUACUCC	202	0.949116
NC_004161.1	VP40	GAGUAGCUUCUGCCUUUAU	AUAAAGGCAGAAGCUACUC	203	0.948480
NC_004161.1	VP40	CUAUGGUUAUCACCCAGGA	UCCUGGGUGAUAACCAUAG	911	0.942945
NC_004161.1	VP40	AGCAUAUAAUGAUAUUGCA	UGCAAUAUCAUUAUAUGCU	33	0.941891
NC_004161.1	VP40	AAUUGAGGUUCCAGAAUUA	UAAUUCUGGAACCUCAAUU	780	0.940276
NC_004161.1	VP40	GCUGAUCAGAAGAUAUACA	UGUAUAUCUUCUGAUCAGC	301	0.939085
NC_004161.1	VP40	GAUAUUGCAUACCCUAUGA	UCAUAGGGUAUGCAAUAUC	43	0.936559
NC_004161.1	VP40	ACAAGAUUCAAACAAUCAU	AUGAUUGUUUGAAUCUUGU	704	0.932870
NC_004161.1	VP40	GAAGAUAUACAGCUUUGAU	AUCAAAGCUGUAUAUCUUC	309	0.930052
NC_004161.1	VP40	AGAACAUAGUUGGAAUUGA	UCAAUUCCAACUAUGUUCU	767	0.928615
NC_004161.1	VP40	UAUUGGAAGCUACAGUGAA	UUCACUGUAGCUUCCAAUA	221	0.928582
NC_004161.1	VP40	AGAAAGGACAUGCUUCAGA	UCUGAAGCAUGUCCUUUCU	671	0.928055
NC_004161.1	VP40	GACAGGAAAGAAAGGACAU	AUGUCCUUUCUUUCCUGUC	663	0.927735
NC_004161.1	VP40	CAGCUUCCCCAGUAUUUCA	UGAAAUACUGGGGAAGCUG	499	0.927038
NC_004161.1	VP40	CCAUGAGACCAGUGGCUGA	UCAGCCACUGGUCUCAUGG	149	0.924560
NC_004161.1	VP40	AGGCGCGGAGUGUUACCAA	UUGGUAACACUCCGCGCCU	4	0.924456
NC_004161.1	VP40	CGCUGGUACGUGUCAACAG	CUGUUGACACGUACCAGCG	392	0.924361
NC_004161.1	VP40	CCAAGAACAUAGUUGGAAU	AUUCCAACUAUGUUCUUGG	764	0.922978
NC_004161.1	VP40	GGCUCCUCCAGCAUAUAAU	AUUAUAUGCUGGAGGAGCC	24	0.922940
NC_004161.1	VP40	GGGGCAGAUGUUCCAUCAA	UUGAUGGAACAUCUGCCCC	127	0.922696
NC_004161.1	VP40	GGCUCUCACUCCAUCCCAA	UUGGGAUGGAGUGAGAGCC	617	0.922388
NC_004161.1	VP40	CAAUCAGGCAUUCCUUCAA	UUGAAGGAAUGCCUGAUUG	459	0.921401
NC_004161.1	VP40	UGCAAUACCGGACCUCAAA	UUUGAGGUCCGGUAUUGCA	726	0.921029
NC_004161.1	VP40	GCAAUACCGGACCUCAAAA	UUUUGAGGUCCGGUAUUGC	727	0.919638
NC_004161.1	VP40	GGAACAAAAGUCCUGAUGA	UCAUCAGGACUUUUGUUCC	250	0.919427
NC_004161.1	VP40	AAUGAUAUUGCAUACCCUA	UAGGGUAUGCAAUAUCAUU	40	0.917379
NC_004161.1	VP40	CAUCACCUGACAAGAUUCA	UGAAUCUUGUCAGGUGAUG	695	0.916129
NC_004161.1	VP40	AGAAGAUAUACAGCUUUGA	UCAAAGCUGUAUAUCUUCU	308	0.915424
NC_004161.1	VP40	UCUAAAGCUCAUCACUCAA	UUGAGUGAUGAGCUUUAGA	534	0.914036
NC_004161.1	VP40	AGUAGCUUCUGCCUUUAUA	UAUAAAGGCAGAAGCUACU	204	0.913294
NC_004161.1	VP40	AGUGGCUGAUGAUAACAUU	AAUGUUAUCAUCAGCCACU	159	0.910863
NC_004161.1	VP40	AUAUUGGAAGCUACAGUGA	UCACUGUAGCUUCCAAUAU	220	0.910476
NC_004161.1	VP40	GAAUUGAGGUUCCAGAAUU	AAUUCUGGAACCUCAAUUC	779	0.910331
NC_004161.1	VP40	UACCGGACCUCAAAAUUGU	ACAAUUUUGAGGUCCGGUA	731	0.910235
NC_004161.1	VP40	GGGAAGACAGGAAAGAAAG	CUUUCUUUCCUGUCUUCCC	658	0.910072
NC_004161.1	VP40	AUCACCUGACAAGAUUCAA	UUGAAUCUUGUCAGGUGAU	696	0.909647
NC_004161.1	VP40	UGAUAACAUUGAUCACUCA	UGAGUGAUCAAUGUUAUCA	168	0.908135
NC_004161.1	VP40	AAAGAAAGGACAUGCUUCA	UGAAGCAUGUCCUUUCUUU	669	0.907803
NC_004161.1	VP40	GAUUCAAACAAUCAUGAAU	AUUCAUGAUUGUUUGAAUC	708	0.907038
NC_004161.1	VP40	CAUGCUUCAGACUUAACAU	AUGUUAAGUCUGAAGCAUG	679	0.905278
NC_004161.1	VP40	AGUUCUUCUUCCGAAAUAU	AUAUUUCGGAAGAAGAACU	858	0.905215
NC_004161.1	VP40	AGGAAAGAAAGGACAUGCU	AGCAUGUCCUUUCUUUCCU	666	0.904769
NC_004161.1	VP40	CACUGGGUGUAGCUGAUCA	UGAUCAGCUACACCCAGUG	290	0.904645
NC_004161.1	VP40	CCUAUGAGCAUACUCCCAA	UUGGGAGUAUGCUCAUAGG	55	0.904044
NC_004161.1	VP40	GAUAUACAGCUUUGAUUCA	UGAAUCAAAGCUGUAUAUC	312	0.901672
NC_004161.1	VP40	GGGUGUAGCUGAUCAGAAG	CUUCUGAUCAGCUACACCC	294	0.900208
NC_004161.1	VP40	AACCCGACCAAGUGUCAUA	UAUGACACUUGGUCGGGUU	72	0.898874
NC_004161.1	VP40	GGCGCGGAGUGUUACCAAC	GUUGGUAACACUCCGCGCC	5	0.897702
NC_004161.1	VP40	CAUAGUUGGAAUUGAGGUU	AACCUCAAUUCCAACUAUG	771	0.896951
NC_004161.1	VP40	CCGCUGGUACGUGUCAACA	UGUUGACACGUACCAGCGG	391	0.896620
NC_004161.1	VP40	AGUGUCAUAGUCAAUGAGA	UCUCAUUGACUAUGACACU	82	0.895909
NC_004161.1	VP40	CGGGAACAAAAGUCCUGAU	AUCAGGACUUUUGUUCCCG	248	0.895845
NC_004161.1	VP40	ACCUGACAAGAUUCAAACA	UGUUUGAAUCUUGUCAGGU	699	0.894836
NC_004161.1	VP40	AGGCAUUCCUUCAAGAGUU	AACUCUUGAAGGAAUGCCU	464	0.894600
NC_004161.1	VP40	ACCAAUUAUUCCAGUUCUU	AAGAACUGGAAUAAUUGGU	846	0.894027
NC_004161.1	VP40	GGAAUUGAGGUUCCAGAAU	AUUCUGGAACCUCAAUUCC	778	0.892234
NC_004161.1	VP40	CAAGAACAUAGUUGGAAUU	AAUUCCAACUAUGUUCUUG	765	0.892178
NC_004161.1	VP40	CCUUUAUAUUGGAAGCUAC	GUAGCUUCCAAUAUAAAGG	215	0.892119
NC_004161.1	VP40	CCCUAUGAGCAUACUCCCA	UGGGAGUAUGCUCAUAGGG	54	0.891392
NC_004161.1	VP40	CAGAAUUACUAGUUCAAAG	CUUUGAACUAGUAAUUCUG	791	0.891102
NC_004161.1	VP40	AUGAUAUUGCAUACCCUAU	AUAGGGUAUGCAAUAUCAU	41	0.890216
NC_004161.1	VP40	AGAGUUUGUUCUUCCACCA	UGGUGGAAGAACAAACUCU	477	0.888818
NC_004161.1	VP40	UUCCAGAAUUACUAGUUCA	UGAACUAGUAAUUCUGGAA	788	0.888608
NC_004161.1	VP40	AGUUGGAAUUGAGGUUCCA	UGGAACCUCAAUUCCAACU	774	0.886621
NC_004161.1	VP40	CAUUUGAUCUAACAGCUCU	AGAGCUGUUAGAUCAAAUG	518	0.884897
NC_004161.1	VP40	GCCGCAAUUAUGUUGGCUU	AAGCCAACAUAAUUGCGGC	337	0.884767
NC_004161.1	VP40	AUUUGAUCUAACAGCUCUA	UAGAGCUGUUAGAUCAAAU	519	0.883188
NC_004161.1	VP40	CAAAAUUGUCCCGAUUGAU	AUCAAUCGGGACAAUUUUG	741	0.882997
NC_004161.1	VP40	AAACAAUCAUGAAUGCAAU	AUUGCAUUCAUGAUUGUUU	713	0.882068
NC_004161.1	VP40	AGAUUCAAACAAUCAUGAA	UUCAUGAUUGUUUGAAUCU	707	0.881757
NC_004161.1	VP40	UAGCUGAUCAGAAGAUAUA	UAUAUCUUCUGAUCAGCUA	299	0.879838
NC_004161.1	VP40	ACCCGCUGGUACGUGUCAA	UUGACACGUACCAGCGGGU	389	0.879625
NC_004161.1	VP40	GUACGUGUCAACAGGCUAG	CUAGCCUGUUGACACGUAC	397	0.879229
NC_004161.1	VP40	CCAACCCGACCAAGUGUCA	UGACACUUGGUCGGGUUGG	70	0.878709
NC_004161.1	VP40	AUAUACAGCUUUGAUUCAA	UUGAAUCAAAGCUGUAUAU	313	0.877419
NC_004161.1	VP40	CGGGGAAGACAGGAAAGAA	UUCUUUCCUGUCUUCCCCG	656	0.877309
NC_004161.1	VP40	ACUUAACAUCACCUGACAA	UUGUCAGGUGAUGUUAAGU	689	0.876523
NC_004161.1	VP40	CAGAAGAUAUACAGCUUUG	CAAAGCUGUAUAUCUUCUG	307	0.875483
NC_004161.1	VP40	CAAAAAACCACAACCCAAA	UUUGGGUUGUGGUUUUUUG	819	0.874417
NC_004161.1	VP40	GCAAUCAGGCAUUCCUUCA	UGAAGGAAUGCCUGAUUGC	458	0.873176
NC_004161.1	VP40	UCAUGAAUGCAAUACCGGA	UCCGGUAUUGCAUUCAUGA	719	0.872707
NC_004161.1	VP40	GCUUCAGACUUAACAUCAC	GUGAUGUUAAGUCUGAAGC	682	0.871957
NC_004161.1	VP40	GCAAUUAUGUUGGCUUCCU	AGGAAGCCAACAUAAUUGC	340	0.871305
NC_004161.1	VP40	ACCUCAAAAUUGUCCCGAU	AUCGGGACAAUUUUGAGGU	737	0.871188
NC_004161.1	VP40	CAGUGGCUGAUGAUAACAU	AUGUUAUCAUCAGCCACUG	158	0.871108
NC_004161.1	VP40	ACCCAGGAUUGUGAUUCAU	AUGAAUCACAAUCCUGGGU	922	0.870666
NC_004161.1	VP40	AUCAGAAGAUAUACAGCUU	AAGCUGUAUAUCUUCUGAU	305	0.869085
NC_004161.1	VP40	UGUAGCUGAUCAGAAGAUA	UAUCUUCUGAUCAGCUACA	297	0.867291
NC_004161.1	VP40	CAAUACCGGACCUCAAAAU	AUUUUGAGGUCCGGUAUUG	728	0.864586
NC_004161.1	VP40	ACAUGCUUCAGACUUAACA	UGUUAAGUCUGAAGCAUGU	678	0.864347
NC_004161.1	VP40	CGUAUCACAUGGACAAGCA	UGCUUGUCCAUGUGAUACG	962	0.864271
NC_004161.1	VP40	AGUCCAGCUUCCCCAGUAU	AUACUGGGGAAGCUGGACU	495	0.863892
NC_004161.1	VP40	CAACAACAGCCGCAAUUAU	AUAAUUGCGGCUGUUGUUG	329	0.861762
NC_004161.1	VP40	GAUUGUGAUUCAUGCCACU	AGUGGCAUGAAUCACAAUC	928	0.861373
NC_004161.1	VP40	GGUUAUCACCCAGGAUUGU	ACAAUCCUGGGUGAUAACC	915	0.860728
NC_004161.1	VP40	GAACAUAGUUGGAAUUGAG	CUCAAUUCCAACUAUGUUC	768	0.860052
NC_004161.1	VP40	UCAAGAGUUUGUUCUUCCA	UGGAAGAACAAACUCUUGA	474	0.860046
NC_004161.1	VP40	AGACCAGUGGCUGAUGAUA	UAUCAUCAGCCACUGGUCU	154	0.860034
NC_004161.1	VP40	GCAAAAAACCACAACCCAA	UUGGGUUGUGGUUUUUUGC	818	0.859693
NC_004161.1	VP40	GAAGACAGGAAAGAAAGGA	UCCUUUCUUUCCUGUCUUC	660	0.858528
NC_004161.1	VP40	UGCUUCAGACUUAACAUCA	UGAUGUUAAGUCUGAAGCA	681	0.858480
NC_004161.1	VP40	CUCCAGCAUAUAAUGAUAU	AUAUCAUUAUAUGCUGGAG	29	0.858377
NC_004161.1	VP40	GGGCAAUCAGGCAUUCCUU	AAGGAAUGCCUGAUUGCCC	456	0.857322
NC_004161.1	VP40	CUCACUCCAUCCCAAGCUU	AAGCUUGGGAUGGAGUGAG	621	0.856768
NC_004161.1	VP40	CCAGUGGCUGAUGAUAACA	UGUUAUCAUCAGCCACUGG	157	0.856613
NC_004161.1	VP40	UCAAAAUUGUCCCGAUUGA	UCAAUCGGGACAAUUUUGA	740	0.856218
NC_004161.1	VP40	GUGUAGCUGAUCAGAAGAU	AUCUUCUGAUCAGCUACAC	296	0.855547
NC_004161.1	VP40	UCCGAAAUAUGUUGGACUU	AAGUCCAACAUAUUUCGGA	867	0.854273
NC_004161.1	VP40	CCGCAAUUAUGUUGGCUUC	GAAGCCAACAUAAUUGCGG	338	0.850961
NC_004161.1	VP40	CGGAGUGUUACCAACGGCU	AGCCGUUGGUAACACUCCG	9	0.850885
NC_004161.1	VP40	ACGGCUCCUCCAGCAUAUA	UAUAUGCUGGAGGAGCCGU	22	0.850622
NC_004161.1	VP40	UCCUAAGGUUGGGCAAUCA	UGAUUGCCCAACCUUAGGA	446	0.850509
NC_004161.1	VP40	UGACCGGCAAAAAACCACA	UGUGGUUUUUUGCCGGUCA	812	0.850283
NC_004161.1	VP40	GAGCAUACUCCCAACCCGA	UCGGGUUGGGAGUAUGCUC	60	0.848532
NC_004161.1	VP40	AAUGCAAUACCGGACCUCA	UGAGGUCCGGUAUUGCAUU	724	0.847912
NC_004161.1	VP40	CAUUCCUUCAAGAGUUUGU	ACAAACUCUUGAAGGAAUG	467	0.845821
NC_004161.1	VP40	CAACCCGACCAAGUGUCAU	AUGACACUUGGUCGGGUUG	71	0.845353
NC_004161.1	VP40	UAACAGCUCUAAAGCUCAU	AUGAGCUUUAGAGCUGUUA	527	0.844301
NC_004161.1	VP40	CCAGUAUUUCACAUUUGAU	AUCAAAUGUGAAAUACUGG	507	0.844070
NC_004161.1	VP40	CACAUUUGAUCUAACAGCU	AGCUGUUAGAUCAAAUGUG	516	0.843839
NC_004161.1	VP40	CCUAAGGUUGGGCAAUCAG	CUGAUUGCCCAACCUUAGG	447	0.843795
NC_004161.1	VP40	AGUGCCAGGGGCAGAUGUU	AACAUCUGCCCCUGGCACU	120	0.843736
NC_004161.1	VP40	GAGACCAGUGGCUGAUGAU	AUCAUCAGCCACUGGUCUC	153	0.843593
NC_004161.1	VP40	UACAGCUUUGAUUCAACAA	UUGUUGAAUCAAAGCUGUA	316	0.842455
NC_004161.1	VP40	AAGGCUGACCGGCAAAAAA	UUUUUUGCCGGUCAGCCUU	807	0.841969
NC_004161.1	VP40	GAUUCAACAACAGCCGCAA	UUGCGGCUGUUGUUGAAUC	325	0.841667
NC_004161.1	VP40	CAACCAUUGCCAGCUGCAA	UUGCAGCUGGCAAUGGUUG	550	0.841168
NC_004161.1	VP40	GUCCAGCUUCCCCAGUAUU	AAUACUGGGGAAGCUGGAC	496	0.840804
NC_004161.1	VP40	CAACGGCUCCUCCAGCAUA	UAUGCUGGAGGAGCCGUUG	20	0.840763
NC_004161.1	VP40	AUUGGAAGCUACAGUGAAU	AUUCACUGUAGCUUCCAAU	222	0.840595
NC_004161.1	VP40	GACAUGCUUCAGACUUAAC	GUUAAGUCUGAAGCAUGUC	677	0.839577
NC_004161.1	VP40	GAUCAGAAGAUAUACAGCU	AGCUGUAUAUCUUCUGAUC	304	0.839342
NC_004161.1	VP40	GGAGUGUUACCAACGGCUC	GAGCCGUUGGUAACACUCC	10	0.839271
NC_004161.1	VP40	ACAGCUCUAAAGCUCAUCA	UGAUGAGCUUUAGAGCUGU	529	0.839036
NC_004161.1	VP40	AGGGGCAGAUGUUCCAUCA	UGAUGGAACAUCUGCCCCU	126	0.838590
NC_004161.1	VP40	AACAUCACCUGACAAGAUU	AAUCUUGUCAGGUGAUGUU	693	0.838370
NC_004161.1	VP40	GUAGCUUCUGCCUUUAUAU	AUAUAAAGGCAGAAGCUAC	205	0.837728
NC_004161.1	VP40	UGGAAUUGAGGUUCCAGAA	UUCUGGAACCUCAAUUCCA	777	0.837398
NC_004161.1	VP40	UGGAAGCUACAGUGAAUGU	ACAUUCACUGUAGCUUCCA	224	0.836340
NC_004161.1	VP40	GUGUCAUAGUCAAUGAGAC	GUCUCAUUGACUAUGACAC	83	0.836213
NC_004161.1	VP40	UGGCUGAUGAUAACAUUGA	UCAAUGUUAUCAUCAGCCA	161	0.836029
NC_004161.1	VP40	GCCGGGGAAGACAGGAAAG	CUUUCCUGUCUUCCCCGGC	654	0.835908
NC_004161.1	VP40	AAGGACAUGCUUCAGACUU	AAGUCUGAAGCAUGUCCUU	674	0.835381
NC_004161.1	VP40	CAUAUAAUGAUAUUGCAUA	UAUGCAAUAUCAUUAUAUG	35	0.835314
NC_004161.1	VP40	CAAGAUUCAAACAAUCAUG	CAUGAUUGUUUGAAUCUUG	705	0.834635
NC_004161.1	VP40	CGCGGAGUGUUACCAACGG	CCGUUGGUAACACUCCGCG	7	0.834341
NC_004161.1	VP40	GUAUUUCACAUUUGAUCUA	UAGAUCAAAUGUGAAAUAC	510	0.833096
NC_004161.1	VP40	GACCGGCAAAAAACCACAA	UUGUGGUUUUUUGCCGGUC	813	0.832814
NC_004161.1	VP40	GAAAGGACAUGCUUCAGAC	GUCUGAAGCAUGUCCUUUC	672	0.831662
NC_004161.1	VP40	AGGAUUGUGAUUCAUGCCA	UGGCAUGAAUCACAAUCCU	926	0.829787
NC_004161.1	VP40	CCAAAAAUGGCCAACCAAU	AUUGGUUGGCCAUUUUUGG	833	0.829057
NC_004161.1	VP40	AAUUGUCCCGAUUGAUCCA	UGGAUCAAUCGGGACAAUU	744	0.829013
NC_004161.1	VP40	UUUGAUCUAACAGCUCUAA	UUAGAGCUGUUAGAUCAAA	520	0.827132
NC_004161.1	VP40	CUCCUCCAGCAUAUAAUGA	UCAUUAUAUGCUGGAGGAG	26	0.826904
NC_004161.1	VP40	AAUUACUAGUUCAAAGGCU	AGCCUUUGAACUAGUAAUU	794	0.826712
NC_004161.1	VP40	UUACUAGUUCAAAGGCUGA	UCAGCCUUUGAACUAGUAA	796	0.826259
NC_004161.1	VP40	CUGCCGGGGAAGACAGGAA	UUCCUGUCUUCCCCGGCAG	652	0.826146
NC_004161.1	VP40	GUGGCUGAUGAUAACAUUG	CAAUGUUAUCAUCAGCCAC	160	0.825953
NC_004161.1	VP40	GGAAGACAGGAAAGAAAGG	CCUUUCUUUCCUGUCUUCC	659	0.824818
NC_004161.1	VP40	GGUUGGGCAAUCAGGCAUU	AAUGCCUGAUUGCCCAACC	452	0.823903
NC_004161.1	VP40	AUACAGCUUUGAUUCAACA	UGUUGAAUCAAAGCUGUAU	315	0.823827
NC_004161.1	VP40	CAGGCAUUCCUUCAAGAGU	ACUCUUGAAGGAAUGCCUG	463	0.823005
NC_004161.1	VP40	UCAGAAGAUAUACAGCUUU	AAAGCUGUAUAUCUUCUGA	306	0.821927
NC_004161.1	VP40	GAAAGAAAGGACAUGCUUC	GAAGCAUGUCCUUUCUUUC	668	0.821882
NC_004161.1	VP40	AAGUGUCAUAGUCAAUGAG	CUCAUUGACUAUGACACUU	81	0.820596
NC_004161.1	VP40	AGCUCUAAAGCUCAUCACU	AGUGAUGAGCUUUAGAGCU	531	0.820329
NC_004161.1	VP40	GAGUGUUACCAACGGCUCC	GGAGCCGUUGGUAACACUC	11	0.818924
NC_004161.1	VP40	UGCCGGGGAAGACAGGAAA	UUUCCUGUCUUCCCCGGCA	653	0.817250
NC_004161.1	VP40	CCGGGGAAGACAGGAAAGA	UCUUUCCUGUCUUCCCCGG	655	0.816468
NC_004161.1	VP40	CGACUCCUAAGGUUGGGCA	UGCCCAACCUUAGGAGUCG	442	0.815979
NC_004161.1	VP40	UAACUAUGGUUAUCACCCA	UGGGUGAUAACCAUAGUUA	908	0.815863
NC_004161.1	VP40	GUUACCAACGGCUCCUCCA	UGGAGGAGCCGUUGGUAAC	15	0.814221
NC_004161.1	VP40	CACCUGACAAGAUUCAAAC	GUUUGAAUCUUGUCAGGUG	698	0.813668
NC_004161.1	VP40	GCUCCUCCAGCAUAUAAUG	CAUUAUAUGCUGGAGGAGC	25	0.813251
NC_004161.1	VP40	AGCUGAUCAGAAGAUAUAC	GUAUAUCUUCUGAUCAGCU	300	0.813068
NC_004161.1	VP40	UGGGUGUAGCUGAUCAGAA	UUCUGAUCAGCUACACCCA	293	0.812875
NC_004161.1	VP40	GGAUUGUGAUUCAUGCCAC	GUGGCAUGAAUCACAAUCC	927	0.811682
NC_004161.1	VP40	GACCUCAAAAUUGUCCCGA	UCGGGACAAUUUUGAGGUC	736	0.811596
NC_004161.1	VP40	ACUCCAAGCGGAGUAGCUU	AAGCUACUCCGCUUGGAGU	193	0.811462
NC_004161.1	VP40	GCUUCCACUGGGUGUAGCU	AGCUACACCCAGUGGAAGC	285	0.811252
NC_004161.1	VP40	CACCAGUCCAGCUUCCCCA	UGGGGAAGCUGGACUGGUG	491	0.810186
NC_004161.1	VP40	CAUCCGUAUCACAUGGACA	UGUCCAUGUGAUACGGAUG	958	0.809743
NC_004161.1	VP40	GAAUGUAAUUUCGGGAACA	UGUUCCCGAAAUUACAUUC	237	0.809468
NC_004161.1	VP40	UUAACAUCACCUGACAAGA	UCUUGUCAGGUGAUGUUAA	691	0.808291
NC_004161.1	VP40	AAAGGACAUGCUUCAGACU	AGUCUGAAGCAUGUCCUUU	673	0.806720
NC_004161.1	VP40	GUUCCAGAAUUACUAGUUC	GAACUAGUAAUUCUGGAAC	787	0.805143
NC_004161.1	VP40	AUGUAAUUUCGGGAACAAA	UUUGUUCCCGAAAUUACAU	239	0.805128
NC_004161.1	VP40	GCUGACCGGCAAAAAACCA	UGGUUUUUUGCCGGUCAGC	810	0.805125
NC_004161.1	VP40	UUGAUCUAACAGCUCUAAA	UUUAGAGCUGUUAGAUCAA	521	0.804977
NC_004161.1	VP40	GGCAGAUGUUCCAUCAAAC	GUUUGAUGGAACAUCUGCC	129	0.804435
NC_004161.1	VP40	GCCCAGGAAUACCCGAUCA	UGAUCGGGUAUUCCUGGGC	416	0.804345
NC_004161.1	VP40	UCCAGCUUCCCCAGUAUUU	AAAUACUGGGGAAGCUGGA	497	0.804196
NC_004161.1	VP40	UGCAUACCCUAUGAGCAUA	UAUGCUCAUAGGGUAUGCA	48	0.803967
NC_004161.1	VP40	GAUUCAUGCCACUCUCCAG	CUGGAGAGUGGCAUGAAUC	934	0.803692
NC_004161.1	VP40	AGUGUUACCAACGGCUCCU	AGGAGCCGUUGGUAACACU	12	0.803637
NC_004161.1	VP40	AAGAUUCAAACAAUCAUGA	UCAUGAUUGUUUGAAUCUU	706	0.802783
NC_004161.1	VP40	ACAGUGACACACUUCGGGA	UCCCGAAGUGUGUCACUGU	361	0.801269

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