Welcome to Home page of EbolaVCR



Ebola Virus Computational Resources (EbolaVCR) is the in silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. This server enlists possible vaccine candidates, therapeutic siRNAs and other related resources.
Reference: Dhanda et. al. (2016) A web-based resource for designing therapeutics against Ebola Virus. Sci Rep. 6:24782.
Result
StrainGenemRNAsiRNAPositionEfficacy
NC_004161.1VP24UGACAAGACUCAAAACAAAUUUGUUUUGAGUCUUGUCA1701.177236
NC_004161.1VP24GCAUGUUGUCAAUUACAAUAUUGUAAUUGACAACAUGC5011.115225
NC_004161.1VP24GACAAGACUCAAAACAAAUAUUUGUUUUGAGUCUUGUC1711.107904
NC_004161.1VP24CUGACAAGACUCAAAACAAUUGUUUUGAGUCUUGUCAG1691.089754
NC_004161.1VP24GCGAUGACAAGAAAUCUUUAAAGAUUUCUUGUCAUCGC2081.082872
NC_004161.1VP24CCCUGCAUGUUGUCAAUUAUAAUUGACAACAUGCAGGG4971.074234
NC_004161.1VP24AGUUCAAGAGCCUGACAAAUUUGUCAGGCUCUUGAACU6001.047660
NC_004161.1VP24CUUCUGACAAGACUCAAAAUUUUGAGUCUUGUCAGAAG1661.046664
NC_004161.1VP24GGCGAUGACAAGAAAUCUUAAGAUUUCUUGUCAUCGCC2071.044219
NC_004161.1VP24CAUUAAUAAUGGAGUUCAAUUGAACUCCAUUAUUAAUG7191.042962
NC_004161.1VP24GCUCCUAACUACAACGUCAUGACGUUGUAGUUAGGAGC3751.040682
NC_004161.1VP24GAGUUUGAUGUAAGUCAAAUUUGACUUACAUCAAACUC1361.032628
NC_004161.1VP24CGAUGACAAGAAAUCUUUUAAAAGAUUUCUUGUCAUCG2091.030610
NC_004161.1VP24GAUUGGCUCCUAACUACAAUUGUAGUUAGGAGCCAAUC3701.030037
NC_004161.1VP24GGAUGCAAUCAUUAAUAAUAUUAUUAAUGAUUGCAUCC7101.022632
NC_004161.1VP24GGGACUUCUACACACACAAUUGUGUGUGUAGAAGUCCC5441.019616
NC_004161.1VP24GCUUAGUCUUCGUAUGUUAUAACAUACGAAGACUAAGC4321.018341
NC_004161.1VP24UGCAUGUUGUCAAUUACAAUUGUAAUUGACAACAUGCA5001.015459
NC_004161.1VP24GGACUUCUACACACACAAUAUUGUGUGUGUAGAAGUCC5451.005363
NC_004161.1VP24GAUGUAAGUCAAAAAGGCAUGCCUUUUUGACUUACAUC1421.001073
NC_004161.1VP24CCUGGGCGAUGACAAGAAAUUUCUUGUCAUCGCCCAGG2030.999378
NC_004161.1VP24CGCCCUGCAUGUUGUCAAUAUUGACAACAUGCAGGGCG4950.998978
NC_004161.1VP24GGGAUGCAAUCAUUAAUAAUUAUUAAUGAUUGCAUCCC7090.997939
NC_004161.1VP24CAUCUGUUCCAGAACCCAAUUGGGUUCUGGAACAGAUG2320.994915
NC_004161.1VP24CCUGCAUGUUGUCAAUUACGUAAUUGACAACAUGCAGG4980.994051
NC_004161.1VP24AAUCAGCUAUGAAUUCUAAUUAGAAUUCAUAGCUGAUU6170.991292
NC_004161.1VP24CUCUUCUGACAAGACUCAAUUGAGUCUUGUCAGAAGAG1640.989185
NC_004161.1VP24GGCUCUCGGUCUAAUUUCUAGAAAUUAGACCGAGAGCC3510.988415
NC_004161.1VP24UGGUUUACUCAGUAGUAUUAAUACUACUGAGUAAACCA5190.987453
NC_004161.1VP24CUCCUAACUACAACGUCAAUUGACGUUGUAGUUAGGAG3760.986671
NC_004161.1VP24CAACGUCAACACAUUUCAAUUGAAAUGUGUUGACGUUG3860.979265
NC_004161.1VP24CUGCAUGUUGUCAAUUACAUGUAAUUGACAACAUGCAG4990.978755
NC_004161.1VP24CAGUCAAGUUCUCAUUACUAGUAAUGAGAACUUGACUG6470.976339
NC_004161.1VP24UCUUCUGACAAGACUCAAAUUUGAGUCUUGUCAGAAGA1650.974883
NC_004161.1VP24CUGACAAAUCAGCUAUGAAUUCAUAGCUGAUUUGUCAG6110.969484
NC_004161.1VP24UGAGUUUGAUGUAAGUCAAUUGACUUACAUCAAACUCA1350.969248
NC_004161.1VP24GAGCCUGACAAAUCAGCUAUAGCUGAUUUGUCAGGCUC6070.965779
NC_004161.1VP24GUUUGAUGUAAGUCAAAAAUUUUUGACUUACAUCAAAC1380.961871
NC_004161.1VP24GGACCAGUCAAGUUCUCAUAUGAGAACUUGACUGGUCC6430.960796
NC_004161.1VP24CUCUCGGUCUAAUUUCUGAUCAGAAAUUAGACCGAGAG3530.958215
NC_004161.1VP24GCUCUUCUGACAAGACUCAUGAGUCUUGUCAGAAGAGC1630.957342
NC_004161.1VP24GACCAGUCAAGUUCUCAUUAAUGAGAACUUGACUGGUC6440.952549
NC_004161.1VP24GGGCGAUGACAAGAAAUCUAGAUUUCUUGUCAUCGCCC2060.951528
NC_004161.1VP24UCAAGUUCUCAUUACUUCAUGAAGUAAUGAGAACUUGA6500.949395
NC_004161.1VP24AGUUUGAUGUAAGUCAAAAUUUUGACUUACAUCAAACU1370.949224
NC_004161.1VP24AAAUCAGCUAUGAAUUCUAUAGAAUUCAUAGCUGAUUU6160.947090
NC_004161.1VP24CGGGACUUCUACACACACAUGUGUGUGUAGAAGUCCCG5430.943756
NC_004161.1VP24AGUCAAGUUCUCAUUACUUAAGUAAUGAGAACUUGACU6480.937588
NC_004161.1VP24GAAGUUCAAGAGCCUGACAUGUCAGGCUCUUGAACUUC5980.936014
NC_004161.1VP24UCAAGAGCCUGACAAAUCAUGAUUUGUCAGGCUCUUGA6030.935375
NC_004161.1VP24GAAAAGGGAGUGAUUUUUAUAAAAAUCACUCCCUUUUC520.934435
NC_004161.1VP24AGUUCUCAUUACUUCAUGAUCAUGAAGUAAUGAGAACU6530.933705
NC_004161.1VP24UGCAAGGUUGGAAGGUUUAUAAACCUUCCAACCUUGCA1040.930109
NC_004161.1VP24CUUUGAUCAGGUCAAACAUAUGUUUGACCUGAUCAAAG4520.929643
NC_004161.1VP24CUGCAAGGUUGGAAGGUUUAAACCUUCCAACCUUGCAG1030.927729
NC_004161.1VP24GACAAAUCAGCUAUGAAUUAAUUCAUAGCUGAUUUGUC6130.926679
NC_004161.1VP24AAUGGUUUACUCAGUAGUAUACUACUGAGUAAACCAUU5170.926127
NC_004161.1VP24GGGGCUCUCGGUCUAAUUUAAAUUAGACCGAGAGCCCC3490.926080
NC_004161.1VP24GCCUGGGCGAUGACAAGAAUUCUUGUCAUCGCCCAGGC2020.925393
NC_004161.1VP24AUUUCUGAUUGGCUCCUAAUUAGGAGCCAAUCAGAAAU3640.925322
NC_004161.1VP24ACGCCCUGCAUGUUGUCAAUUGACAACAUGCAGGGCGU4940.922109
NC_004161.1VP24CCUGACAAAUCAGCUAUGAUCAUAGCUGAUUUGUCAGG6100.919714
NC_004161.1VP24AGUGAUUUUUAGUGAUCUUAAGAUCACUAAAAAUCACU600.916581
NC_004161.1VP24AGCCUGACAAAUCAGCUAUAUAGCUGAUUUGUCAGGCU6080.915729
NC_004161.1VP24ACCAGUCAAGUUCUCAUUAUAAUGAGAACUUGACUGGU6450.913552
NC_004161.1VP24GAUUACUCAAACCCUGCAAUUGCAGGGUUUGAGUAAUC900.910658
NC_004161.1VP24GCAAGGUUGGAAGGUUUAUAUAAACCUUCCAACCUUGC1050.905628
NC_004161.1VP24CUUCGUACUAGAAGCGUAAUUACGCUUCUAGUACGAAG4060.902007
NC_004161.1VP24GUUCAAGAGCCUGACAAAUAUUUGUCAGGCUCUUGAAC6010.901571
NC_004161.1VP24UGACAAAUCAGCUAUGAAUAUUCAUAGCUGAUUUGUCA6120.900675
NC_004161.1VP24GGACCAGCUUAGUCUUCGUACGAAGACUAAGCUGGUCC4260.900177
NC_004161.1VP24GGUUUACUCAGUAGUAUUGCAAUACUACUGAGUAAACC5200.899297
NC_004161.1VP24AAAGGACCAGCUUAGUCUUAAGACUAAGCUGGUCCUUU4230.897465
NC_004161.1VP24GAGUCUGCCUUCAAACCUUAAGGUUUGAAGGCAGACUC6700.897429
NC_004161.1VP24CAAUGGUUUACUCAGUAGUACUACUGAGUAAACCAUUG5160.897181
NC_004161.1VP24GUUUACUCAGUAGUAUUGAUCAAUACUACUGAGUAAAC5210.894100
NC_004161.1VP24ACUUCUACACACACAAUCAUGAUUGUGUGUGUAGAAGU5470.892541
NC_004161.1VP24CAAUCUGGGAUGCAAUCAUAUGAUUGCAUCCCAGAUUG7030.892169
NC_004161.1VP24CUACAACGUCAACACAUUUAAAUGUGUUGACGUUGUAG3830.892158
NC_004161.1VP24GCUUGACGCCCUGCAUGUUAACAUGCAGGGCGUCAAGC4890.890753
NC_004161.1VP24UAACUACAACGUCAACACAUGUGUUGACGUUGUAGUUA3800.890211
NC_004161.1VP24UCUGGGAUGCAAUCAUUAAUUAAUGAUUGCAUCCCAGA7060.888702
NC_004161.1VP24ACAACGUCAACACAUUUCAUGAAAUGUGUUGACGUUGU3850.888384
NC_004161.1VP24CAAGUUCUCAUUACUUCAUAUGAAGUAAUGAGAACUUG6510.887222
NC_004161.1VP24AAGUUCAAGAGCCUGACAAUUGUCAGGCUCUUGAACUU5990.886597
NC_004161.1VP24AGGACCAGUCAAGUUCUCAUGAGAACUUGACUGGUCCU6420.885266
NC_004161.1VP24AGCGUAAAGGACCAGCUUAUAAGCUGGUCCUUUACGCU4180.884931
NC_004161.1VP24GACAAGAAAUCUUUUCCCAUGGGAAAAGAUUUCUUGUC2130.883779
NC_004161.1VP24CUGGGAUGCAAUCAUUAAUAUUAAUGAUUGCAUCCCAG7070.882789
NC_004161.1VP24AUCUGUUCCAGAACCCAAAUUUGGGUUCUGGAACAGAU2330.882485
NC_004161.1VP24GGAAAAGGGAGUGAUUUUUAAAAAUCACUCCCUUUUCC510.881340
NC_004161.1VP24CAAAUCAGCUAUGAAUUCUAGAAUUCAUAGCUGAUUUG6150.881027
NC_004161.1VP24UCUGACAAGACUCAAAACAUGUUUUGAGUCUUGUCAGA1680.880957
NC_004161.1VP24ACUACAACGUCAACACAUUAAUGUGUUGACGUUGUAGU3820.879702
NC_004161.1VP24CUACACACACAAUCAUUAUAUAAUGAUUGUGUGUGUAG5510.879645
NC_004161.1VP24GACCAGCUUAGUCUUCGUAUACGAAGACUAAGCUGGUC4270.879020
NC_004161.1VP24CCCAAAGAAAGAUAUGGAAUUCCAUAUCUUUCUUUGGG360.877609
NC_004161.1VP24CCACAAUCUGGGAUGCAAUAUUGCAUCCCAGAUUGUGG7000.873654
NC_004161.1VP24CUAGAAGCGUAAAGGACCAUGGUCCUUUACGCUUCUAG4130.871037
NC_004161.1VP24ACAAUGGUUUACUCAGUAGCUACUGAGUAAACCAUUGU5150.870174
NC_004161.1VP24CUGGGCGAUGACAAGAAAUAUUUCUUGUCAUCGCCCAG2040.869470
NC_004161.1VP24CAAGAGCCUGACAAAUCAGCUGAUUUGUCAGGCUCUUG6040.867119
NC_004161.1VP24CCAGGACCAGUCAAGUUCUAGAACUUGACUGGUCCUGG6400.866858
NC_004161.1VP24CUCGGUCUAAUUUCUGAUUAAUCAGAAAUUAGACCGAG3550.865709
NC_004161.1VP24CGUAUGUUAUCUUUGAUCAUGAUCAAAGAUAACAUACG4420.864812
NC_004161.1VP24CCUGCAAGGUUGGAAGGUUAACCUUCCAACCUUGCAGG1020.863646
NC_004161.1VP24AGAUCGGGACUUCUACACAUGUGUAGAAGUCCCGAUCU5390.862576
NC_004161.1VP24GUCAACACAUUUCAAUCUUAAGAUUGAAAUGUGUUGAC3900.862536
NC_004161.1VP24CAAGAAAUCUUUUCCCACAUGUGGGAAAAGAUUUCUUG2150.860901
NC_004161.1VP24GUUAUCUUUGAUCAGGUCAUGACCUGAUCAAAGAUAAC4470.859283
NC_004161.1VP24UGAUUGGCUCCUAACUACAUGUAGUUAGGAGCCAAUCA3690.857914
NC_004161.1VP24CGUGUUCCACAAUCUGGGAUCCCAGAUUGUGGAACACG6940.857304
NC_004161.1VP24CAAGCUUGACGCCCUGCAUAUGCAGGGCGUCAAGCUUG4860.856824
NC_004161.1VP24CGGUCUAAUUUCUGAUUGGCCAAUCAGAAAUUAGACCG3570.855267
NC_004161.1VP24UCUUGAUUACUCAAACCCUAGGGUUUGAGUAAUCAAGA860.854693
NC_004161.1VP24UGAUCAGGUCAAACAUCUUAAGAUGUUUGACCUGAUCA4550.853501
NC_004161.1VP24GUCAAGUUCUCAUUACUUCGAAGUAAUGAGAACUUGAC6490.852072
NC_004161.1VP24GUACUAGAAGCGUAAAGGAUCCUUUACGCUUCUAGUAC4100.851403
NC_004161.1VP24GUUUUCUCGUGGAAGUUCAUGAACUUCCACGAGAAAAC5870.848865
NC_004161.1VP24CUUAGUCUUCGUAUGUUAUAUAACAUACGAAGACUAAG4330.848166
NC_004161.1VP24UGGAAGUUCAAGAGCCUGAUCAGGCUCUUGAACUUCCA5960.847665
NC_004161.1VP24GACAGGGGCUCUCGGUCUAUAGACCGAGAGCCCCUGUC3450.844555
NC_004161.1VP24AAUUUCUGAUUGGCUCCUAUAGGAGCCAAUCAGAAAUU3630.842887
NC_004161.1VP24UCUUCGUACUAGAAGCGUAUACGCUUCUAGUACGAAGA4050.840343
NC_004161.1VP24CUUGAUUACUCAAACCCUGCAGGGUUUGAGUAAUCAAG870.839185
NC_004161.1VP24AUGUAAGUCAAAAAGGCAUAUGCCUUUUUGACUUACAU1430.839104
NC_004161.1VP24AUCUGGGAUGCAAUCAUUAUAAUGAUUGCAUCCCAGAU7050.837819
NC_004161.1VP24GCUCUCGGUCUAAUUUCUGCAGAAAUUAGACCGAGAGC3520.837809
NC_004161.1VP24CACAAUCAUUAUAACUCGUACGAGUUAUAAUGAUUGUG5580.837708
NC_004161.1VP24CAGAACCCAAAUUCGGUUAUAACCGAAUUUGGGUUCUG2410.837333
NC_004161.1VP24GCCCUGCAUGUUGUCAAUUAAUUGACAACAUGCAGGGC4960.837269
NC_004161.1VP24UAUCUUUGAUCAGGUCAAAUUUGACCUGAUCAAAGAUA4490.837043
NC_004161.1VP24GACGCCCUGCAUGUUGUCAUGACAACAUGCAGGGCGUC4930.836441
NC_004161.1VP24ACAAGACUCAAAACAAAUGCAUUUGUUUUGAGUCUUGU1720.832825
NC_004161.1VP24CAUGUUGUCAAUUACAAUGCAUUGUAAUUGACAACAUG5020.832532
NC_004161.1VP24ACUCAAACCCUGCAAGGUUAACCUUGCAGGGUUUGAGU940.831780
NC_004161.1VP24CCUAACUACAACGUCAACAUGUUGACGUUGUAGUUAGG3780.830473
NC_004161.1VP24AUGGUUUACUCAGUAGUAUAUACUACUGAGUAAACCAU5180.828903
NC_004161.1VP24UUAUCUUUGAUCAGGUCAAUUGACCUGAUCAAAGAUAA4480.827128
NC_004161.1VP24UCUGAUUGGCUCCUAACUAUAGUUAGGAGCCAAUCAGA3670.826593
NC_004161.1VP24GGUAAUUUUGGCAGCCGGAUCCGGCUGCCAAAAUUACC2850.825045
NC_004161.1VP24GCGUAAAGGACCAGCUUAGCUAAGCUGGUCCUUUACGC4190.824717
NC_004161.1VP24AGGUUUAUUGGGCAGGAAUAUUCCUGCCCAAUAAACCU1160.823182
NC_004161.1VP24CAAGGUUGGAAGGUUUAUUAAUAAACCUUCCAACCUUG1060.821183
NC_004161.1VP24AGGGGCUCUCGGUCUAAUUAAUUAGACCGAGAGCCCCU3480.819319
NC_004161.1VP24AGUCUGCCUUCAAACCUUUAAAGGUUUGAAGGCAGACU6710.819281
NC_004161.1VP24UCAUGAGUCUGCCUUCAAAUUUGAAGGCAGACUCAUGA6660.817285
NC_004161.1VP24AGCUUAGUCUUCGUAUGUUAACAUACGAAGACUAAGCU4310.817269
NC_004161.1VP24GUUAUUCAAUCUCCCAUCUAGAUGGGAGAUUGAAUAAC2560.816916
NC_004161.1VP24ACAUCUGUUCCAGAACCCAUGGGUUCUGGAACAGAUGU2310.814780
NC_004161.1VP24AAGGUUUAUUGGGCAGGAAUUCCUGCCCAAUAAACCUU1150.813520
NC_004161.1VP24GAAGGUUUAUUGGGCAGGAUCCUGCCCAAUAAACCUUC1140.812755
NC_004161.1VP24AAUCUGGGAUGCAAUCAUUAAUGAUUGCAUCCCAGAUU7040.812000
NC_004161.1VP24CUUCUACACACACAAUCAUAUGAUUGUGUGUGUAGAAG5480.810389
NC_004161.1VP24UGGAAAAGGGAGUGAUUUUAAAAUCACUCCCUUUUCCA500.809324
NC_004161.1VP24GAUUUUUAGUGAUCUUUGUACAAAGAUCACUAAAAAUC630.809109
NC_004161.1VP24ACCAGCUUAGUCUUCGUAUAUACGAAGACUAAGCUGGU4280.808386
NC_004161.1VP24CAAUCAUUAUAACUCGUACGUACGAGUUAUAAUGAUUG5600.806613
NC_004161.1VP24AUUGAGAUCGGGACUUCUAUAGAAGUCCCGAUCUCAAU5350.806374
NC_004161.1VP24GCCUGACAAAUCAGCUAUGCAUAGCUGAUUUGUCAGGC6090.805451
NC_004161.1VP24UCUUUGAUCAGGUCAAACAUGUUUGACCUGAUCAAAGA4510.804147
NC_004161.1VP24GGGCUCUCGGUCUAAUUUCGAAAUUAGACCGAGAGCCC3500.803725
NC_004161.1VP24CUCAUUACUUCAUGAGUCUAGACUCAUGAAGUAAUGAG6570.803330
NC_004161.1VP24GGCUCUUCUGACAAGACUCGAGUCUUGUCAGAAGAGCC1620.800566