Web Services (A to Z)

Web Server/Software Developed at Raghava's Group

  1. ABCpred: Mapping of B-cell epitope(s) in an antigen sequence, using artificial neural network.
  2. abmpred:Prediction of AntiBacterial Compounds against MurA Enzyme.
  3. absource:All possible informations regarding the antibodies.
  4. Ab-Affi: Computer program for calculating affinity of a monoclonal antibody using non-competitive ELISA.
  5. ADPint:Predicion of ADP interacting residue.
  6. AHTpin: Designing and virtual screening of antihypertensive peptides.
  7. ALGpred: Prediction of allergenic proteins and mapping of IgE epitopes in antigens.
  8. ALPHApred: A neural network based method for predicting alpha-turn in a protein.
  9. AntiAngiopred: A Server for Prediction of Anti-Angiogenic Peptides.
  10. AntiBP: Mapping of antibacterial peptides in a protein sequence.
  11. AntiBP2: Mapping of antibacterial peptides in a protein sequence.
  12. AntiCP: Prediction and design of anticancer peptides.
  13. AntiFP: A Prediction server for Antifungal Peptide.
  14. AntigenDB: an immunoinformatics database of pathogen antigens.
  15. AntiTbPdb: A database of anti-tubercular peptides.
  16. ApoCanD:  Database of Human Apoptotic Proteins in the context of cancer.
  17. APSSP:  Advanced Protein Secondary Structure Prediction Server.
  18. APSSP2: Prediction of secondary structure of proteins from their amino acid sequence.
  19. Ar_NHpred: Identification of aromatic-backbone NH interaction in protein residues.
  20. ATPint: Identification of ATP binding sites in ATP-binding proteins.
  21. BCEpred: Prediction of linear B-cell epitopes, using Physico-chemical properties.
  22. BCIpep: Collection & compilation of B-cell epitopes from literature.
  23. BetaTPred: Statistical-based method for predicting Beta Turns in a protein.
  24. BetaTPred2: Statistical-based method for predicting Beta Turns in a protein.
  25. BetaTPred3: Prediction of beta turns and their types.
  26. BetaTurns: Prediction of beta turn types.
  27. BhairPred: Prediction of beta hairpins in proteins using ANN and SVM techniques.
  28. BIAdb: A Database for Benzylisoquinoline Alkaloids.
  29. BioTherapi: Bioinformatics for Therapeutic Peptides and Proteins.
  30. BTEVAL: Evaluation of beta-turns prediction methods.
  31. BTXpred: A server for predicting bacterial toxins.
  32. CancerCSP: Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer.
  33. CancerDP: Prioritization of anticancer drugs against a cancer using genomic features of cancer cells.
  34. CancerDR: Cancer drug resistance database.
  35. CanceRES: Cancer Informatics Portal.
  36. CancerIN:A web server for predicting anticancer activity of molecules.
  37. CancerPDF: Database of cancer-associated peptides of human bodyfluids.
  38. CancerPPD:  Database of anticancer peptides and proteins.
  39. CancerPred: Prediction of the cancerlectins.
  40. Cancertope: A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer.
  41. CancerUBM: Web bench for analysis of proteomics data and prediction of cancer status of a urine samples.
  42. CBTOPE: Conformational B-cell Epitope prediction.
  43. CCDB: Database of genes involved in Cervix Cancer.
  44. ccPDB: Compilation and Creation of datasets from PDB.
  45. CellPPD: Computer-aided Designing of efficient cell penetrating peptides.
  46. ChemoPred: A server to predict chemokines and their receptor
  47. ChloroPred: Prediction of chloroplast proteins.
  48. CHpredicts: Prediction of CH-O, CH-PI interactions in backbone residues of a protein 
  49. codon:Plot Graph for Codon Composition (from standard codon usage table) Vs Codons.
  50. COPid: Composition based identification and classification of proteins.
  51. CPPsite: A web page for cell penetrating peptides.
  52. CPPsite 2.0:  A database of experimentally validated cell penetrating Peptides.
  53. CRDD: Computational resources for drug discovery.
  54. CRIP: Computational Resources for molecular Interaction Prediction
  55. csirdb:Identification of Cancer-specific siRNAs for personalized therapy.
  56. CTLPred: A direct method for prediction of CTL epitopes. 
  57. CytoPred: It is a webserver for prediction and classification of cytokines.
  58. CyclinPred: CyclinPred is a SVM based prediction method to identify novel cyclins.
  59. DADpred: Prediction of drugs against aspartate semialdehyde dehydrogenase of DAP pathway.
  60. DAMpro: Disease Associated Mutations in Proteins.
  61. dbEM: A Database of Epigenetic Modifiers
  62. desiRam: Designing of highly efficient siRNA with minimum mutation approach
  63. DiPCell: Designing of inhibitors against pancreatic cancer cell lines.
  64. DNAbinder: A webserver for predicting DNA-binding proteins.
  65. DNAint: Prediction of DNA Interacting Residues.
  66. DNAOPT: Computer program for optimizing the conditions of gel electrophoresis and SDS-PAGE.
  67. DNASIZE: Computer program for computing the size of DNA fragments from gel data using a graphical method.
  68. DPROT:SVM-based method for predicting of disordered proteins.
  69. DrugMint: A web server for identification of drug like molecules.
  70. EbolaVCR: A web-based resource for designing therapeutics against Ebola Virus.
  71. ECDB: Endometrial cancer gene database.
  72. ECGPred: Analsis of expresion data and correlation between gene expression and nucleotides composition of genes.
  73. EGFRindb: A database of EGF(Epidermal Growth Factor) receptors  (anticaner database).
  74. EGFRpred: A web service for the predicting and designing of inhibitors against EGFR (anticancer drugs).
  75. EGPred: Prediction of gene (protein coding regions) in eukaryote genomes that includes introns/exons.
  76. ELISAeq: Computer program for determining the concentration of antibody/antigen from ELISA data.
  77. ESLpred: Subcellular localization of the eukaryotic proteins using dipeptide compostion and PSI-BLAST.
  78. ESLpred2: Advanced method for subcellular localization of eukaryotic proteins.
  79. FADpred : A webserver for the prediction of FAD interacting residues.
  80. fisipred: Phi-Psi angle prediction using average angle prediction technique.
  81. FTG: Locating probable protein coding region in nucleotide sequence using FFT based algorithm.
  82. ftgpred:Gene Identification using Fourier Transformation.
  83. GammaPred: Identification of gamma-turn containing residues in a given protein sequence.
  84. GENESIS: It is a mega project initiated for establishing CSIR in the field of knowledge based discovery.
  85. GDoQ: Prediction of GLMU inhibitors (anti-tubeculosis inhibitors) using QSAR and docking apprach.
  86. genebench:A suite of tools and datasets for benchmarking gene finders.
  87. genomeabc:GenomeABC is a web server for evaluating the performance of genome assemblers.
  88. GlycoEP: Prediction of C-, N- and O-glycosylation site in eukaryotic proteins. 
  89. GlycoPP: Prediction of potential N-and O-glycosites in prokaryotic proteins.
  90. GMAP: Computer program for mapping potential restriction endonuclease sites in non-ambiguous DNA. 
  91. GMPEsi: Generalized Model for Predicting Efficacy of siRNAs.
  92. GPCRpred: Prediction of families and superfamilies of G-protein coupled receptors (GPCR).
  93. GPCRsclass: This webserver predicts amine type of G-protein coupled receptors
  94. GPSR: A resource for genomocs, proteomics and system biology
  95. GSTpred: SVM-based method for predicting Glutathione S-transferase protein.
  96. GTPbinder: Identification of GTP binding residue in protein sequences. 
  97. GWBLAST:Genome-wide sequence similarity search using BLAST.
  98. GWFASTA: Genome-wide sequence similarity search using FASTA.
  99. GDPbio: Genome based prediction of Diseases and Personal Medicine
  100. HaptenDB: A database of haptens, provide comprehensive information about the hapten molecule.
  101. HemolytiK: A repository of experimentally validated hemolytic and non-hemolytic peptides.
  102. HemoPI: Prediction and virtual screening of hemolytic peptides.
  103. HerceptinR: Information about assays performend to test sensitivity/resistance of Herceptin Antibodies.
  104. HIVbio: HIV related bioinformatics resources.
  105. HIVcoPRED: Predicting coreceptor used by HIV-1 from Its V3 loop amino acid sequence.
  106. HIVfin: Prediction of Fusion Inhibitors against HIV (drugs against HIV)
  107. HIVint: Prediction of protein-protein interaction between HIV and Human proteins.
  108. HIVsir: A manually curated database of anti-HIV siRNAs.
  109. HLA-DR4Pred: Identification of HLA-DRB1*0401(MHC class II alleles) binding peptides.
  110. HLApred:Identification and prediction of HLA class I and class II Binders.
  111. HLP: Designing of stable antibacterial peptides.
  112. HMRbase: A manually curated database of hormones and their Receptors.
  113. HSLpred: Prediction of subcellular localization of human proteins with high accuracy
  114. HumCFS: A database of fragile sites in human chromosome.
  115. icaars: Identification & Classification of Aminoacyl tRNA Synthetases.
  116. IFNepitope: A server for predicting and designing interferon-gamma inducing epitopes.
  117. IgPred: Prediction of antibody specific B-cell epitope.
  118. IL10pred: Prediction of Interleukin-10 inducing peptides.
  119. IL4pred: In silico platform for designing and disovering of Interleukin-4 inducing peptides.
  120. IL4IFNG: Computer program for computing of murine interleukin-4 and interferon-gamma. 
  121. imRNA: Prediction of Immunomodulatory RNAs.
  122. KiDoQ: Prediction of inhibition against dihydrodipicolinate synthase of M. Tuberculosis.
  123. LBtope: A server for predicting linear B-cell epitopes.
  124. LGEpred: Correlation analysis and prediction of genes expression from amino acid sequence of proteins.
  125. LPIcom: Analysis and prediction of ligand protein interaction.
  126. MARSpred: Prediction of mitochondrial aminoacyl tRNA synthetases.
  127. MDPS: A web server designed for in silico drug discovery towards M. tuberculosis.
  128. MDRIpred: Predicting inhibitor against drug tolrent M.Tuberculosis.
  129. MetaPred: Prediction of Cytochrome P450 Isoform responsible for metabolizing a drug molecule.
  130. MHCBN: A database of Major Histocompatibility Complex (MHC) Binding, Non-binding peptides .
  131. TmhcPred: A webserver that predict MHC Class I and II binding peptides.
  132. mhc:Matrix Optimization Technique for Predicting MHC binding Core.
  133. mhcbench:Evaluation of MHC Binding Peptide Prediction Algorithms.
  134. mhc2pred:SVM based method for prediction of promiscuous MHC class II binders.
  135. MHCBN: A database od Major Histocompatibility Complex (MHC) Binding,Non-binding peptides.
  136. MHCBN4: A database of MHC/TAP binding peptides and T-cell epitopes.
  137. MitPred: Prediction of mitochondrial proteins using SVM and hidden Markov model.
  138.  MtbVeb: A webportal for designing vaccine against drug resistant and emerging strains of M. tuberculosis.
  139. MycoTb: A software for managing mycobacterium tuberculosis.
  140. NADbinder: Prediction of NAD interacting residues in proteins.
  141. nagsite:A webserver for the prediction of N-acetyl glucosamine Interacting residue.
  142. nHLAPred: A neural network based method for predicting MHC Class-I binders.
  143. NPACT: A curated database of plant derived natural compounds that exhibit anti-cancerous activity.
  144. NPpred:  A webserver for the prediction of nuclear proteins.
  145. NRpred:  A SVM based method for the classification of nuclear receptors .
  146. ntEGFR: QSAR-Based Models for designing inhibitors against Wild and Mutant EGFR (anti-cancer drug).
  147. NTXpred: Identification of neurotoxins their source and function from primary amino acid sequence.
  148. OSCADD: Open Source for Computer-Aided Drug Discovery portal is for chemoinformatics and pharmacoinformatics.
  149. OSDDChem: A interface for large scale synthesis of diverse chemical compounds to screen them against TB and Malaria.
  150. OSDDlinux: A customize operating system for drug discovery.
  151. OXDbase: A database of Biodegradative oxygenase.
  152. OXYpred: Classification and prediction of oxygen binding proteins.
  153. PAAINT: A webservice for predicting residue-residue contacts in proteins.
  154. ParaPep: Compilation of experimentally validated anti-parasitic peptides and their structures. 
  155. Pcleavage: Identification of protesosomal cleavage sites in a protein sequence. 
  156. PCMdb: A database of methylated genes found in pancreatic cancer cell lines and tissues.
  157. PEPlife: Database of experimentally validated therapeutic peptides and their half lives.
  158. PEPstr: Prediction of structure of peptides.
  159. PEPstrMODStructural prediction of peptides containing natural, non-natural and modified residues.  
  160. PFMpred: Predicting mitochondrial proteins of malaria parasite Plasmodium falciparum.
  161. PHDcleav: Prediction of human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. 
  162. PLDbench: Benchmarking of docking software on peptide-ligand complexes. 
  163. PlifePred: An insilico method to design and predict the half life of modified and natural peptides in blood. 
  164. PolyApred: Prediction of polyadenylation signal (PAS) in human DNA sequence.
  165. PolysacDB:  A comprehensive Database of microbial Polysaccharide antigens and their antibodies.
  166. PPDBench:  Benchmarking of docking software on protein-peptide complexes.
  167. Pprint:  A  web-server for predicting RNA-binding residues of a protein.
  168. PreMieR:  A webserver for the prediction of Mannose Interacting residue.
  169. proclass: protein structure classification server.
  170. ProCarDB: A database of bacterial carotenoids.
  171. PROGLYCPROT:  Database of experimentally characterized eubacterial and archaeal glycoproteins.
  172.  ProPred: A webserver to  predict MHC Class-II binding regions in an antigen sequence.
  173. ProPred-1: Prediction of  promiscuous MHC Class-I binders.
  174. ProPrInt: A web-server predicts physical or functional interactions between protein molecules.
  175. PRRDB: A database of pattern recognition receptor.
  176. PSAWeb: Analysis of Protein Sequence and Multiple Alignment.
  177. PSEApred: Prediction of Plasmodium Secretory and Infected Erythrocyte Associated Proteins.
  178. PSLpred: Predict subcellular localization of prokaryotic proteins.
  179. QASpro: A webserver for the Quality Assesment of Protein Structure.
  180. RB-Pred: A weather based rice blast prediction server.
  181. RISICbinder: Prediction of guide strand of microRNAs from its sequence and secondary structure.
  182. RNAcon: A web-server for the prediction and classification of non-coding RNAs.
  183. RNAint: Identification of RNA interacting residues in a protein.
  184. RNApin: Prediction of Protein Interacting Nucleotides (PINs) in RNA sequences.
  185. RNApred: A webserver for the prediction of RNA binding proteins.
  186. RRCpred: A Webserver for predicting residue-residue contact.
  187. RSLpred: A method for the subcellular localization prediction of rice proteins.
  188. SAPdb: A database of nanostructure formed by self assembly of short peptide.
  189. SARpred: A neural network based method predicts the real value of surface acessibility.
  190. SATPdb: A database of structurally annotated therapeutic peptides .
  191. siRNApred: SVM based method for predicting efficacy value of siRNA.
  192. SRF: A program to find repeats through an analysis of the power spectrum of a given DNA sequence. 
  193. SRTpred: A method for the classification of protein sequence as secretory or non-secretory protein.
  194. STARPDB: A webserver for annotating structure of a protein using simililarity based approach.
  195. TAPPred: A webserver for predicting binding affinity of peptides toward the TAP transporter.
  196. TBBpred: A webserver for the prediction of transmembrane Beta barrel regions in a given protein sequence.
  197. TBpred: A webserver  that predicts four subcellular localization of mycobacterial proteins.
  198. THPdb: A database of FDA approved therapeutic peptides and proteins.
  199. TopicalPdb: A Database of Topically Administered Peptide.
  200. ToxinPred: An in silico method, which is developed to predict and design toxic/non-toxic peptides.
  201. ToxiPred: A server for prediction of aqueous toxicity of small chemical molecules in T. pyriformis.
  202. tRNAmod: The tRNAmod is a web-server for the prediction of transfer RNA (tRNA) modifications.
  203. TSP-PRED: A webservice for predicting Tertiary Structure of proteins.
  204. TumorHope: A comprehensive database of Tumor Homing Peptides.
  205. TumorHPD: A webserver for predicting and designing of tumor homing peptides.
  206. VaccineDA: A webserver for prediction of oligodeoxynucleotide vaccine adjuvant.
  207. VaxinPAD: A webserver for designing peptide based vaccine adjuvant.
  208. VGIchan: Voltage gated ion channel prediction server.
  209. VICMPpred:  Prediction of Virulence factors, Information molecule, Cellular process and Metabolism molecule in the Bacterial proteins.
  210. VitaPred: A webserver for predicting the vitamin interacting residue.
  211. XIAPin: Designing of efficient inhibitors against apoptosis protein XIAP (inhibitor against drug resistance cancer).
  212. ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis