Patent/CopyRight

Copyrights on major software package

 

  1. Raghava, G.P.S. (1996) ASSP: A computer program for comparision of observed and predicted protein secondary structure. L-15582/96.
  2. Raghava, G.P.S. (1996) A computer program for analysing and creating protein secondary structure database. L-15658/96.
  3. Raghava, G.P.S and Agrawal, P. A (1997) Software for phylogcncitic identification of microorganisms. C R. 1/97, date 11.3.97
  4. Raghava, G.P.S (2001) A computer program for assisting the user in using protein modelling software package (PMOD 1.0) . SW-393/2001, date 08/02/2001
  5. Kaur, H. and Raghava, G.P.S. (2002) BETATPRED: Software for predicting b -turns using statistical algorithm. SW-1162/2003
  6. Raghava, G.P.S. (2002) DNASIZE: A software package for computing DNA/Protein fragments. SW-1156/2003.
  7. Issac, B., Singh, H., Kaur, H. and Raghava, G.P.S. (2002) FTG: Software Package for Predicting Gene in DNA using Fast Fourier Transform. SW-1154/2003.
  8. Issac, B. and Raghava, G.P.S. (2002) GWBLAST: Software Package for Genome Wide Similarity Search using BLAST. SW-1149/2003
  9. Issac, B. and Raghava, G.P.S. (2002) GWFASTA: Computer program for genome wide FASTA search. SW-1143/2003.
  10. Raghava, G.P.S. (2002) LibInet: Software Package for Managing Library Resources and Accessing via Internet. SW-1155/2003.
  11. Singh, H. and Raghava, G.P.S. (2002) MHCB ench: Evaluation of MHC Binding Peptide Prediction Algorithms. SW-1160/2003.
  12. Singh, H. and Raghava, G.P.S. (2002) MOT: Matrix Optimization Technique for identifying the MHC binding core. SW-1159/2003
  13. Raghava, G.P.S. (2002) PCLASS: Computer Program for predicting structural class of protein via Internet. SW-1157/2003
  14. Raghava, G.P.S. (2002) PDSB: Software Package for Managing Public Domain Software in Biology. SW-1148/2003.
  15. Raghava, G.P.S. (2002) PDWSB: Software Package for creating and managing Biological Web Servers. SW-1152/2003.
  16. Singh, H. and Raghava, G.P.S. (2002) ProPred: Software package for predicting promiscuous MHC class-II binding peptides. SW-1163/2003
  17. Singh, H. and Raghava, G.P.S. (2002) ProPred-I: Software package for predicting promiscuous MHC Class-I binding peptides. SW-1161/2003
  18. Raghava, G.P.S. (2002) PSAweb: Software package for Analyzing of Protein Sequence and Multiple Alignment. SW-1158/2003.
  19. Bhasin, M. and Raghava, G. P.S. (2003) MHCBN: A software package for managing data of Immunologically related peptides. SW-1151/200
  20. Bhasin, M. and Raghava, G. P.S. (2003) HLA-DR4Pred: An SVM and ANN based software for the prediction of HLA-DRB0401 binding peptides (Submitted).
  21. Saha, H. Bhasin, M. and Raghava, G. P.S. (2003) Bcipep: A software package for management of B cell epitopes. SW-1851/200
  22. Bhasin, M. and Raghava, G. P.S. (2002) A Webserver for Prediction of Promiscuous And High Affinity Mutated MHC Binders (Submitted).
  23. Bhasin, M. and Raghava, G. P.S. (2002) TAPPred: A software package for predicting TAP binding affinity of peptides via internet. SW-1847/2005.
  24. Kaur, H. and Raghava, G.P.S. (2003) AlphaPred: A software for prediction of Alpha-turns in proteins (Submitted)
  25. Kaur, H. and Raghava, G.P.S. (2003) BetatPred2: A software for prediction of beta-turns in proteins from multiple alignment using neural network (Submitted).
  26. Kaur, H. and Raghava, G.P.S. (2003) BetaTurns: A software for prediction of beta-turn types in proteins from evolutionary information using neural network (Submitted).
  27. Kaur, H. and Raghava, G.P.S. (2003) Ar_NHPred: A software for prediction of aromatic-backbone NH interactions in proteins. SW-1850/2005.
  28. Issac, B and G.P.S. Raghava (2003) SVMgene: Predicting protein coding regions in human genomic DNA using SVM. SW-1852/2005.
  29. Kaur, H. and Raghava, G.P.S. (2003) CHPredict: A software for prediction of C-H...O and C-H...( interactions in proteins using recurrent neural network (Submitted).
  30. Bhasin,M. and Raghava, G. P. S. (2005) Pcleavage: A SVM based Method for Prediction of Consitutive and Immuno proteasome Cleavage Sites in Antigenic Sequences. SW-1950/2005.
  31. Bhasin, M. and Raghava, G. P. S. (2004) ESLpred: SVM Based Method for Subcellular Localization of Eukaryotic Proteins using Dipeptide Composition and PSI-BLAST. SW-2104/2005.
  32. Bhasin, M. and Raghava, G. P. S. (2004) GPCRpred: An SVM Based Method for Prediction of families and subfamilies of G-protein coupled receptors Nucleic. SW-2108/2005.
  33. Kush, A. and Raghava, G. P. S. (2008) AC2DGel: Analysis and Comparison of 2D Gels. SW-2123/2005
  34. Bhasin, M. and Raghava, G. P. S.(2005) GPCRsclass : A web tool for classification of amine type of G-protein coupled Receptors. SW-1947/2005.
  35. Saha, S. and Raghava, G. P. S.(2006) VICMpred: SVM-based method for the prediction of functional proteins of gram-negative bacteria using amino acid patterns and composition. SW-2287/2005.
  36. Singh, H. and Raghava, G. P. S.(2007) Prediction and mapping of promiscuous MHC class II binders in an antigen sequence. SW-2286/2005
  37. Saha, S. and Raghava, G. P. S. (2006) AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes. SW-3013/2006.
  38. Kumar, M., Thakur, V. and Raghava, G. P. S. (2008) COPid: composition based protein identification. SW-3074/2005.
  39. Bhasin,M. and Raghava, G.P.S. (2004)Classification of nuclear receptors based on amino acid composition and dipeptide composition. SW-2124/2005.
  40. Aarti Garg, Manoj Bhasin, and Gajendra P. S. Raghava (2005). SVM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search. SW-2269/2005.
  41. Saha, S. and Raghava, G. P. S. (2007) Prediction of neurotoxins based on their function and source.SW-2352/2005.
  42. Saha, S. and Raghava, G. P. S. (2007) Prediction of bacterial proteins. SW-2652/2005.
  43. Rashid M., Saha S. and Raghava, G. P. S. (2007)TBPred:A SVM based subcellular localization prediction method for Mycobacterial proteins. SW-3635/2007
  44. Rakesh Kaundal and Raghava, G. P. S. RSLpred:A svm based method for subcellular localization prediction of rice proteins. SW-3638/2007.
  45. Ahmed Firoz, Kumar M. and Raghava G.P.S. PolyApred: SVM based method for predicting of polyadenylation signals in human DNA sequence. SW-3637/2007.
  46. Ahmed Firoz, Singh J. and Raghava G.P.S. CDpred:Prediction of cleavage site of Dicer using support vector machine. (Submitted)
  47. Lata, S. and Raghava, G. P. S. (2008) PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands (Submitted).
  48. Ahmed Firoz, Ansari H.R. and Raghava G.P.S. RISCbinder:Prediction of guide strand of microRNAs from its sequence and secondary structure. (Submitted).
  49. A suite of programs for computer-aided vaccine design. SW-2264/2005.
  50. Ahmed Firoz, Singh J. and Raghava G.P.S. (2009) CDpred:Prediction of cleavage site of Dicer using support vector machine. (SW-4017/2009).
  51. Lata, S. and Raghava, G. P. S. (2009) PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands (SW-4018/2009).
  52. Ahmed, F., Ansari, H.R. And Raghava, G.P.S (2009)Prediction of guide strand of microRNAs from its sequence and seconure (RISC binder in Short) (SW-4193/2009).
  53. Panwar, B. And Raghava, G.P.S (2010) Prediction and classification of Aminoacyl tNRA syntheases using signature profile-based descriptors (SW-4633/2010).
  54. Ansari, H.R. And Raghava, G.P.S (2010) Identification of NAD interacting residues in proteins (SW-4637/2010).
  55. Chauhan, J.S. , Mishra, N.K. And Raghava, G.P.S (2010) GTPBinder: A web based tool for prediction of GTP binding residue in protein sequence (SW-4638/2010).
  56. Rashid, M and Raghava, G.P.S (2010) MycoPrint: Prediction of protein-protein interaction in Mycobacterium tuberculosis (SW-4635/2010).
  57. Mishra, N.K and Raghava, G.P.S (2010) FADPred: Prediction of FAD interacting amino acid residue using evolutionary information and SVM (SW-4639/2010)
  58. Chauhan, J.S., Mishra, N.K. And Raghava, G.P.S (2010) ATPrint: Prediction of ATP interacting amino acidacterium tuberculosis (SW-4635/2010).
  59. Kumar, S. And Raghava, G.P.S : GenomeABC: A platform for benchmarking of genome assemblers (CR No. 035CR2011).
  60. Sharma, A. , Singla, D. , Rashid M and Raghava, G.P.S (2011) DESTAMP: Designing of stable antibacterial mutant peptides (CR No. 036CR2011).
  61. Mishra, N.K, Singla, D. , Agarwal, S. And Raghava G.P.S (2011) ToxiPred: A server for prediction of aqueous toxicity of small chemical molecules in T. Pyri(2011)
  62. Ansari, H.R., Agarwal, S. And Raghava, G.P.S (2011) NPTOPE for the prediction of non-peptide epitopes using QSAR based Random Forest model (CR No. 013CR2010).
  63. Agarwal, S, Mishra, N.K and Raghava, G.P.S (2011) PreMieR: Prediction of Mannose Interacting Residues (CR No. 011CR2010).
  64. Rahman, H and Raghava G.P.S (2011) CBTOPE for the identification of conformational B-cell Epitopes in an antigen from its primary sequence. (CR No. 016CR2010 ).
  65. Singh, H. , Agarwal, S. , Ansari, H.R and Raghava, G.P.S (2011) SfePred: Prediction of the year of evolution of swine flu (CR No. 005CR2010).
  66. Panwar, B. And Raghava, G.P.S (2011) Discrimination between cytosolic and mitocondrial tRNA synthetases (CR No. 039CR2010).
  67. Sharma, A, Singla, D., Rashid, M. and Raghava, G.P.S. (2011) “DESTAMP: Designing of stable antibacterial mutant peptides (Applied).
  68. Ansari, H.R., Singla, D., Raghava, G.P.S. (2011) “TLR4hi- a software for computing antagonist of human TLR4”.
  69. Panwar,B., Gupta, S., and Raghava, G.P.S. ( Raghava, G.P.S. (2012) “Drugmint: Knowledge based approach for predicting drug-likeness of a molecule (Applied).
  70. Singh, H., Ansari, H.R. and Raghava, G.P.S. (2012) "LBtope: Improved method for linear B-cell epitope prediction using antigen’s primary sequence (Applied).
  71. Dhanda, S.,K., Singla, D., Mondal, A.,K. and Raghava, G.P.S. (2012) “Drugmint: Knowledge based approach for predicting drug-likeness of a molecule (Applied)
  72. Chhauhan, J.,S., Bhat, A.,H., Rao, A. and Raghava, G.P.S. (2012) “GlycoPP: A Webserver for Prediction of N- O-Glycosites in Prokaryotic Protein Sequences (Applied).
  73. Singh, H., Singh, S., and Raghava, G.P.S. (2013) “PEP2D: Bayesian based approach for predicting secondary structure of peptides using evolutionary information (Applied).