PPDbench Datasets

Here we have provided the PPDbench dataset of 133 protein-peptide complexes on which we performed the benchmarking of docking software. These complexes were downloaded from the Protein Data Bank (PDB). This dataset is developed by using peptiDB and ACCLUSTER datasets. A few criteria was applied to select these 133 complexes.[help page]

Dataset Download (.tar)
PPDbench Complexes Download
PPDbench Receptors Download
PPDbench Ligands Download
Reconstructed Peptides Download
List of PDB IDs used in Vina dataset Download



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