PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2292
Carbohydrate NameCore oligosaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeShigeila sonnei serotype D   (NCBI Taxonomy)   (Drugpedia)
Basic StructureLipopolysaccharide (LPS) molecules consist of three structural regions: a lipid A region, which anchors the molecule in the bacterial outer membrane; an intermediate core region; and a distal, serotype-specific O-polysaccharide chain (O chain or O-antigen). Whereas the chemical composition and structure of 0 chains are highly variable, the core moiety is more conserved. Seven types of LPS core structures, namely, Ra, Ri to R4, K-12, and B, have been found in members of the family Enterobacteriaceae
BCSDB StructureN/A
Proposed functionsN/A
Antigenic Nature used to produce antibodiesHeat killed cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab Sh9R
Antibody type and classIgM
Assay SystemELISA and immunoblotting
Cross-reactivityOnly strains reported to have LPS molecules with an R1-type core structure were recognized, namely, S. sonnei, S. boydii type 3, S. flexneri type 6, a control E. coli R1 strain (HF4704), and an E. coli 09 isolate
Proposed epitopesTerminal hexose residues may form an important part of the epitope
IEDB EpitopeN/A
Proposed UtilityThis Mab has been used to analyze clinical isolates and a hybrid Salmonella typhi strain for their expression of the corresponding LPS moieties. In addition to their use in the screening of candidate vaccine strains, the new MAb provide a powerful tool for epidemiological and phylogenetic studies of natural enterobacterial populations
Curator IDAA + AS
Date of Curation21-03-2011
ReferencesPMC257229


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