PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2209
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeSalmonella enteritidis   (NCBI Taxonomy)   (Drugpedia)
Basic StructureSalmonella enteritidis lipopolysaccharide is composed of high-molecular-weight (HMW) LPS and low-molecular-weight (LMW) LPS. The HMW LPS O-antigen polysaccharides are comprised of two different repeating units, -[-->2)-[α-Tyvp-(1-->3)]beta-D-Manp-(1-->4)-α-L-R hap-(1-->3)-α-D-Galp-(1-->]- (structure I) and [-->2)-[α-Tyvp-(1-->3)]β-D-Manp-(1-->4)-α--L-R hap-(1-->3)-[α-D-Glcp-(1-->4)]α-D-Galp-(1-->]- (structure II). The LMW LPS contains truncated O-antigen polysaccharide which is comprised of only structure I.
BCSDB Structure128190
Proposed functionsLPS plays an important virulence role based on its antiphagocytic and endotoxic properties
Antigenic Nature used to produce antibodiesLive attenuated mutant strain of Salmonella typhimurium
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 8aC10
Antibody type and classN/A
Assay SystemELISA, immunoblotting, passive hemagglutination (PHA), passive hemolysis and agglutination tests
Cross-reactivityThe MAb reacted only with lipopolysaccharides (LPS) of Salmonella strains from group O:4 (B), expressing O:5 antigen. The MAb agglutinated in addition Salmonella strains with O:8 antigen from group C(2)-C(3) but did not react with purified LPS
Proposed epitopesThis Mab is directed to Salmonella O:5 antigen of the LPS. The epitope is possibly localized onto O-acetyl-abequose and abequose residues bound with a α-1-->3 linkage to the basic polysaccharide backbone of Salmonella LPS with O:5 and O:8 antigen respectively
IEDB EpitopeN/A
Proposed UtilityThis Mab can be used for identification of Salmonella strains having O:5 LPS
Curator IDAA + AS
Date of Curation04-03-2011
References12951256


Department of Computational Biology, Indraprastha Institute of Information Technology, Sec - 39A, New Delhi, India - 110020