Cancertope
In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer
Personalized immunotherapy or Vaccine against Cancer
Browse Results ... |
The result page of search shows exclusive peptide/epitopes generated due to mutation [Neoepitope], the tissue of origin [Tissue], position of peptide in protein [Position], number of mismatches counted by aligning mutated and normal protein sequence [Num Mismatch, percentage of cell lines with this peptide over total number of cell lines [Promiscuity %]. The immune information include CTL epitopes (Yes/No), MHC I binders, MHC II binders (both given as number of alleles) and B cell epitopes (Yes/No). For more information, please click |
| Result | Search: | |||||||||||||||||||||||||
| Protein | Neoepitopes | Tissue | Position | Prot Mutation | cDNA Mutation | Mutation Type | Num Mismatch | Promiscuity (%) | Cell Line | CTL | MHC I | NHLApred | MHC II | Bcell | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TTBK1 | FSALPEGEQ | LARGE_INTESTINE | 448 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 2 | 0 | 0 | N | ||||||||||||
| TTBK1 | HNPSPFSAL | LARGE_INTESTINE | 443 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | Y | 10 | 14 | 0 | N | ||||||||||||
| TTBK1 | LPHNPSPFS | LARGE_INTESTINE | 441 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 4 | 0.11 | SNUC4 | N | 5 | 0 | 0 | N | ||||||||||||
| TTBK1 | NPSPFSALP | LARGE_INTESTINE | 444 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | PFSALPEGE | LARGE_INTESTINE | 447 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | PHNPSPFSA | LARGE_INTESTINE | 442 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | PRLPHNPSP | LARGE_INTESTINE | 439 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 4 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | PSPFSALPE | LARGE_INTESTINE | 445 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | RAPPRLPHN | LARGE_INTESTINE | 436 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 4 | 0.11 | SNUC4 | N | 3 | 0 | 0 | N | ||||||||||||
| TTBK1 | RLPHNPSPF | LARGE_INTESTINE | 440 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 4 | 0.11 | SNUC4 | N | 9 | 0 | 0 | N | ||||||||||||
| TTBK1 | SALPEGEQP | LARGE_INTESTINE | 449 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 0 | 0 | 0 | N | ||||||||||||
| TTBK1 | SPFSALPEG | LARGE_INTESTINE | 446 | p.A437fs | c.1309_1310insC | Frame_Shift_Ins | 5 | 0.11 | SNUC4 | N | 1 | 0 | 0 | N | ||||||||||||
|
||||||||||||||||||||||||||