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Details of CancerPDF entry with Sequence PGPPDVPDHA
Primary information
sequence IDSeq_5930
Peptide sequencePGPPDVPDHA
CancerPDF_ID CancerPDF_ID795, CancerPDF_ID8573, CancerPDF_ID9800,
PMID19795908,23667664,21533267
Protein NameInter-alpha-trypsin inhibitor heavy chain H4,Inter-alpha-trypsin inhibitor heavy chain H4,Inter-alpha-trypsin inhibitor heavy chain H4
UniprotKB Entry NameITIH4_HUMAN,ITIH4_HUMAN,ITIH4_HUMAN
FluidPlasma,Serum,Serum
M/Z501.23,1000.46,501.23
Charge2,1,2
Mass (in Da)NA,1002.07,NA
fdrNA,NA,NA
Profiling TechniqueLC-MS,MALDI-TOF,LC-MS
Peptide Identification techniqueMALDI-TOF/TOF,FT-ICR MS/MS + nano-HPLC,LC/MS/MS
Quantification TechniqueLC-MRM (multiple reaction monitoring),NA,Multiple Reaction Monitoring
Labelled/Label FreeLabelled,Label Free,Label Free
FDRless than 7%,NA,1.49
CancerPDF_ID CancerPDF_ID795, CancerPDF_ID8573, CancerPDF_ID9800,
p-ValueNA,NA,NA
SoftwareFlexAnalysis 3.0 and Biotools 3.0 software,MASCOT,MASCOT
Length10,10,10
Cancer TypeDuctal adenocarcinoma of the pancreas (DAP),"Breast cancer, Lung cancer, Rectal cancer",Lung adenocarcinoma
DatabaseNCBI refseq Protein Database,NA,Swissprot Database (57.4)
ModificationNA,NA,NA
Number of Patients"42 normal, 28 patients","Breast Cancer =84, lung cancer= 70, Rectal cancer = 30patients; 500 healthy",62 lung adenocarcinoma and 30 healthy control
RegulationNA,NA,"Differentially expressed between earlier-stage lung cancer group (stage-I, II, and IIIa) vs normal"
ValidationNA,NA,MRM-based validation of 19 candidates
SensitivityNA,NA,NA
SpecificityNA,NA,NA
AccuracyNA,NA,NA
Peptide AtlasNA
IEDB