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Details of CancerPDF entry with Sequence NGDDGEAGKPGRpGERGPpGPQG
Primary information
sequence IDSeq_5612
Peptide sequenceNGDDGEAGKPGRPGERGPPGPQG
CancerPDF_ID CancerPDF_ID10897,
PMID21805675
Protein NameCollagen alpha-1(I) chain
UniprotKB Entry NameCO1A1_HUMAN
FluidUrine
M/Z2234.0037
Profiling TechniqueMALDI-TOF
Peptide Identification techniqueMALDI-TOF-MS
Labelled/Label FreeLabel Free
FDR1
CancerPDF_ID CancerPDF_ID10897,
p-ValueNA
SoftwareNA
Length23
Cancer TypeMuscle-invasive bladder cancer
DatabaseSwissProt Database
Modification"Oxidation: 13, 19"
Number of Patients751 bladder cancer and 127 control
RegulationDifferentially expressed between cancer vs normal samples
ValidationMann-Whitney tests and areas under receiver-operator characteristic
SensitivityNA
SpecificityNA
AccuracyNA
Peptide AtlasNA
IEDBNA
Primary information
sequence IDSeq_5613
Peptide sequenceNGDDGEAGKPGRPGERGppGpQG
CancerPDF_ID CancerPDF_ID3487,
PMID27026199
Protein NameCollagen alpha-1(I) chain
UniprotKB Entry NameCO1A1_HUMAN
FluidUrine
fdr2249.01
Profiling Technique"CE-MS, Micro-TOF-MS"
Peptide Identification techniqueMS-MS
Labelled/Label FreeLabel Free
CancerPDF_ID CancerPDF_ID3487,
p-Valueless than 0.05
SoftwareProteome Discoverer 1.2
Length23
Cancer TypeBladder cancer
DatabaseUniprot Human non-redundant Database
Modificationp:Hydroxy-Proline
Number of Patients451 for training (341 patients and 110 normal) and 270 for testing(168 primary UBC patients and 102 normal controls);
RegulationDifferentially expressed between primary UBC and normal individual
ValidationIndependent Validation
SensitivityFor testing dataset 91%
SpecificityFor testing dataset 68%
AccuracyFor testing dataset 76%
Peptide AtlasNA
IEDBNA
Primary information
sequence IDSeq_5614
Peptide sequenceNGDDGEAGKPGRpGERGPpGPQG
CancerPDF_ID CancerPDF_ID3486,
PMID27026199
Protein NameCollagen alpha-1(I) chain
UniprotKB Entry NameCO1A1_HUMAN
FluidUrine
fdr2233.01
Profiling Technique"CE-MS, Micro-TOF-MS"
Peptide Identification techniqueMS-MS
Labelled/Label FreeLabel Free
CancerPDF_ID CancerPDF_ID3486,
p-Valueless than 0.05
SoftwareProteome Discoverer 1.2
Length23
Cancer TypeBladder cancer
DatabaseUniprot Human non-redundant Database
Modificationp:Hydroxy-Proline
Number of Patients451 for training (341 patients and 110 normal) and 270 for testing(168 primary UBC patients and 102 normal controls);
RegulationDifferentially expressed between primary UBC and normal individual
ValidationIndependent Validation
SensitivityFor testing dataset 91%
SpecificityFor testing dataset 68%
AccuracyFor testing dataset 76%
Peptide AtlasNA
IEDBNA