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Details of CancerPDF entry with Sequence NDGARGSDGQPGPPGppGT
Primary information
sequence IDSeq_5554
Peptide sequenceNDGARGSDGQPGPPGppGT
CancerPDF_ID CancerPDF_ID3641, CancerPDF_ID3647,
PMID27026199,27026199
Protein NameCollagen alpha-1(III) chain,Collagen alpha-1(III) chain
UniprotKB Entry NameCO3A1_HUMAN,CO3A1_HUMAN
FluidUrine,Urine
M/ZNA,NA
ChargeNA,NA
Mass (in Da)NA,NA
fdr1764.8,1764.8
Profiling Technique"CE-MS, Micro-TOF-MS","CE-MS, Micro-TOF-MS"
Peptide Identification techniqueMS-MS,MS-MS
Quantification TechniqueNA,NA
Labelled/Label FreeLabel Free,Label Free
FDRNA,NA
CancerPDF_ID CancerPDF_ID3641, CancerPDF_ID3647,
p-Valueless than 0.05,less than 0.01
SoftwareProteome Discoverer 1.2,Proteome Discoverer 1.2
Length19,19
Cancer TypeBladder cancer,Bladder cancer
DatabaseUniprot Human non-redundant Database,Uniprot Human non-redundant Database
Modificationp:Hydroxy-Proline,p:Hydroxy-Proline
Number of Patients 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls), 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls)
RegulationDifferentially expressed between recurrence of UBC vs recurrence control,Differentially expressed between recurrence of UBC vs recurrence control
ValidationIndependent Validation,Independent Validation
SensitivityFor testing dataset 88%,For testing dataset 88%
SpecificityFor testing dataset 51%,For testing dataset 51%
AccuracyNA,NA
Peptide AtlasNA
IEDB