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Details of CancerPDF entry with Sequence GHRPLDKKREEAPSLRPAPPPISGGGYR
Primary information
sequence IDSeq_2726
Peptide sequenceGHRPLDKKREEAPSLRPAPPPISGGGYR
CancerPDF_ID CancerPDF_ID2802, CancerPDF_ID10678,
PMID21136997,21805675
Protein NameFibrinogen beta chain,Fibrinogen beta chain
UniprotKB Entry NameFIBB_HUMAN,FIBB_HUMAN
FluidPlasma,Urine
M/Z3037.6322,3038.6362
Charge1,NA
Mass (in Da)NA,NA
fdrNA,NA
Profiling TechniqueLC-MS,MALDI-TOF
Peptide Identification techniqueLC-MS-MS/MS,MALDI-TOF-MS
Quantification TechniqueLC-ESI-MS,NA
Labelled/Label FreeLabel Free,Label Free
FDRNA,1
CancerPDF_ID CancerPDF_ID2802, CancerPDF_ID10678,
p-ValueNA,NA
SoftwareMASCOT(v. 2.2.01),NA
Length28,28
Cancer TypeNormal,Muscle-invasive bladder cancer
DatabaseSwissProt Database,SwissProt Database
ModificationNA,NA
Number of Patients27 healthy individuals,751 bladder cancer and 127 control
RegulationNA,Differentially expressed between cancer vs normal samples
ValidationLeave One out Cross validation,Mann-Whitney tests and areas under receiver-operator characteristic
SensitivityNA,NA
SpecificityNA,NA
AccuracyNA,NA
Peptide AtlasPeptideAtlas
IEDB