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Details of CancerPDF entry with Sequence GHPGQPGpPGPpG
Primary information
sequence IDSeq_2723
Peptide sequenceGHPGQPGpPGPpG
CancerPDF_ID CancerPDF_ID3546,
PMID27026199
Protein NameCollagen alpha-1(III) chain
UniprotKB Entry NameCO3A1_HUMAN
FluidUrine
fdr1182.53
Profiling Technique"CE-MS, Micro-TOF-MS"
Peptide Identification techniqueMS-MS
Labelled/Label FreeLabel Free
CancerPDF_ID CancerPDF_ID3546,
p-Valueless than 0.05
SoftwareProteome Discoverer 1.2
Length13
Cancer TypeBladder cancer
DatabaseUniprot Human non-redundant Database
Modificationp:Hydroxy-Proline
Number of Patients 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls)
RegulationDifferentially expressed between recurrence of UBC vs recurrence control
ValidationIndependent Validation
SensitivityFor testing dataset 88%
SpecificityFor testing dataset 51%
AccuracyNA
Peptide AtlasNA
IEDBNA