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Details of CancerPDF entry with Sequence DEPPQSPWDRVKD
Primary information
sequence IDSeq_1223
Peptide sequenceDEPPQSPWDRVKD
CancerPDF_ID CancerPDF_ID3599, CancerPDF_ID10205,
PMID27026199,21805675
Protein NameApolipoprotein A-I,Apolipoprotein A-I
UniprotKB Entry NameAPOA1_HUMAN,APOA1_HUMAN
FluidUrine,Urine
M/ZNA,1568.7118
ChargeNA,NA
Mass (in Da)NA,NA
fdr1567.73,NA
Profiling Technique"CE-MS, Micro-TOF-MS",MALDI-TOF
Peptide Identification techniqueMS-MS,MALDI-TOF-MS
Quantification TechniqueNA,NA
Labelled/Label FreeLabel Free,Label Free
FDRNA,1
CancerPDF_ID CancerPDF_ID3599, CancerPDF_ID10205,
p-Valueless than 0.01,NA
SoftwareProteome Discoverer 1.2,NA
Length13,13
Cancer TypeBladder cancer,Muscle-invasive bladder cancer
DatabaseUniprot Human non-redundant Database,SwissProt Database
ModificationNA,NA
Number of Patients 425 for training(109 patients with Recurrent UBC cases and 316 negative for recurrence controls) and 211 for validation (55 UBC recurrent cases and 156 recurrent controls),751 bladder cancer and 127 control
RegulationDifferentially expressed between recurrence of UBC vs recurrence control,Differentially expressed between cancer vs normal samples
ValidationIndependent Validation,Mann-Whitney tests and areas under receiver-operator characteristic
SensitivityFor testing dataset 88%,NA
SpecificityFor testing dataset 51%,NA
AccuracyNA,NA
Peptide AtlasNA
IEDB